BtaEX6060581 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007148 | F2
Description
Bos taurus coagulation factor II (thrombin) (F2), mRNA. [Source:RefSeq mRNA;Acc:NM_173877]
Coordinates
chr15:77537597-77544536:+
Coord C1 exon
chr15:77537597-77537770
Coord A exon
chr15:77538014-77538195
Coord C2 exon
chr15:77544466-77544536
Length
182 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTCCCTTCCCCAAAGGCT
3' ss Score
9.23
5' ss Seq
CCGGCAAGT
5' ss Score
3.16
Exon sequences
Seq C1 exon
GTATGAGCGGAAGGTTGAAAAGATCTCCATGCTGGACAAGATCTACATCCACCCCAGGTACAACTGGAAGGAGAATCTGGACCGGGACATCGCCCTGCTGAAGCTCAAGAGGCCCATCGAGTTATCCGACTACATCCACCCCGTGTGCCTGCCCGACAAGCAGACAGCAGCCAA
Seq A exon
GCTGCTCCACGCTGGGTTCAAAGGGCGGGTGACGGGCTGGGGCAACCGGAGGGAGACGTGGACCACCAGCGTGGCCGAGGTGCAGCCCAGCGTCCTCCAGGTGGTCAACCTGCCTCTCGTGGAGCGGCCCGTGTGCAAGGCCTCCACCCGGATCCGCATCACCGACAACATGTTCTGTGCCG
Seq C2 exon
GTTACAAGCCTGGTGAAGGCAAACGAGGGGACGCTTGTGAGGGCGACAGCGGGGGACCCTTCGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007148-'27-27,'27-25,29-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.2=100)
A:
PF0008921=Trypsin=FE(24.4=100)
C2:
PF0008921=Trypsin=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGGAAGGTTGAAAAGATCT
R:
CTTCATGACGAAGGGTCCCCC
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]