GgaEX6037721 @ galGal3
Exon Skipping
Gene
ENSGALG00000008332 | F1NXV6_CHICK
Description
NA
Coordinates
chr5:25589640-25591691:-
Coord C1 exon
chr5:25591518-25591691
Coord A exon
chr5:25591176-25591354
Coord C2 exon
chr5:25589640-25589710
Length
179 bp
Sequences
Splice sites
3' ss Seq
AATCCTATTTCTTTCCACAGGCT
3' ss Score
10.08
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATACGAAAGGAATAAAGAGAAAATTGTTCTGTTGGATAAAGTCATCATCCATCCTAAGTACAACTGGAAAGAGAACATGGACCGAGATATTGCACTCCTGCACCTGAAGCGACCGGTCATCTTCAGCGACTACATCCATCCTGTCTGCTTGCCTACCAAGGAGCTTGTGCAGAG
Seq A exon
GCTGATGCTGGCAGGTTTTAAAGGGCGGGTAACTGGCTGGGGAAATCTGAAAGAAACGTGGGCCACTACCCCAGAAAACCTGCCAACAGTTCTGCAACAGCTCAATCTGCCCATTGTAGACCAAAACACCTGCAAGGCATCCACCAGGGTTAAAGTCACAGACAATATGTTCTGTGCTG
Seq C2 exon
GTTACAGTCCTGAAGACTCAAAGAGAGGAGATGCTTGTGAAGGGGACAGTGGGGGGCCTTTTGTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008332-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.417
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.3=100)
A:
PF0008921=Trypsin=FE(24.1=100)
C2:
PF0008921=Trypsin=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTGTTGGATAAAGTCATCATCC
R:
CCACTGTCCCCTTCACAAGC
Band lengths:
202-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]