GgaEX6037721 @ galGal4
Exon Skipping
Gene
ENSGALG00000008332 | F2
Description
prothrombin precursor [Source:RefSeq peptide;Acc:NP_989936]
Coordinates
chr5:22737666-22739717:-
Coord C1 exon
chr5:22739544-22739717
Coord A exon
chr5:22739202-22739380
Coord C2 exon
chr5:22737666-22737736
Length
179 bp
Sequences
Splice sites
3' ss Seq
AATCCTATTTCTTTCCACAGGCT
3' ss Score
10.08
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATACGAAAGGAATAAAGAGAAAATTGTTCTGTTGGATAAAGTCATCATCCATCCTAAGTACAACTGGAAAGAGAACATGGACCGAGATATTGCACTCCTGCACCTGAAGCGACCGGTCATCTTCAGCGACTACATCCATCCTGTCTGCTTGCCTACCAAGGAGCTTGTGCAGAG
Seq A exon
GCTGATGCTGGCAGGTTTTAAAGGGCGGGTAACTGGCTGGGGAAATCTGAAAGAAACGTGGGCCACTACCCCAGAAAACCTGCCAACAGTTCTGCAACAGCTCAATCTGCCCATTGTAGACCAAAACACCTGCAAGGCATCCACCAGGGTTAAAGTCACAGACAATATGTTCTGTGCTG
Seq C2 exon
GTTACAGTCCTGAAGACTCAAAGAGAGGAGATGCTTGTGAAGGGGACAGTGGGGGGCCTTTTGTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008332-'14-24,'14-22,16-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.417
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.3=100)
A:
PF0008921=Trypsin=FE(24.1=100)
C2:
PF0008921=Trypsin=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTGTTGGATAAAGTCATCATCC
R:
CCACTGTCCCCTTCACAAGC
Band lengths:
202-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]