MmuEX6103504 @ mm10
Exon Skipping
Gene
ENSMUSG00000027157 | 4930430A15Rik
Description
RIKEN cDNA 4930430A15 gene [Source:MGI Symbol;Acc:MGI:1914825]
Coordinates
chr2:111218595-111225511:-
Coord C1 exon
chr2:111225405-111225511
Coord A exon
chr2:111220677-111220814
Coord C2 exon
chr2:111218595-111218659
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTATTTCTGTGTTAATTCAGAAA
3' ss Score
6.41
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GATGGCTTTACACCACTTTTACTGGCTCTCAAGGAAAACAAAATAGAGATGGCAAAGTTTTTAGTAAAGATGGGGGCAAATATACATGTATTTGATGACATGAGAAG
Seq A exon
AAACACACTCTTATATGCCATAAGATGGGACTCAAAAGATATGGTCAACCTACTTTTGGATGAAGGCATTGACTTTTTCTTTAGAGATGTATTTGGGTGGACTGCATTACGGTATGCTATTGAAGGCACAAGTAAAGG
Seq C2 exon
TAGTCGAGAGATTCTTATGAACTATGATGAAATGTTACGTAGAAAAAATAAAGATGGCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027157-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(28.4=69.4)
A:
PF127962=Ank_2=FE(52.3=100)
C2:
PF127962=Ank_2=PD(18.2=69.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTACACCACTTTTACTGGC
R:
TCATAGTTCATAAGAATCTCTCGACT
Band lengths:
131-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types