RnoEX0004247 @ rn6
Exon Skipping
Gene
ENSRNOG00000004809 | AC103012.1
Description
NA
Coordinates
chr3:102422506-102425884:-
Coord C1 exon
chr3:102425778-102425884
Coord A exon
chr3:102424578-102424715
Coord C2 exon
chr3:102422506-102422570
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTATTTCTGTGTTAATTCAGAAA
3' ss Score
6.41
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GACGGCTTTACACCACTTTTGCTGGCTCTCAAGGAAAACAAAATAGAGATGGCGAAGTTTTTAGTAAAGAAAGGGGCAAATATACACGTATTTGATGAGATGAAAAG
Seq A exon
AAACACACTTTTATATGCCATAAGATGGGACTCAAAAGATATGGTCAATCTACTTTTGGATGAAGGCATTGACTTTTTCTTTAAAGATGTATTTGGGTGGACTGCATTACGGTATGCTATTGAAGGCACAAGTAAAGG
Seq C2 exon
TAGTCGAGAGATTCTCATGAACTATGATGAAAAGTTACGTAGAAAAAATAAAAATGGCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004809_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(18.2=38.9)
A:
PF127962=Ank_2=FE(59.7=100)
C2:
PF127962=Ank_2=PD(20.8=69.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCTTTACACCACTTTTGC
R:
CATCATAGTTCATGAGAATCTCTCGA
Band lengths:
135-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]