MmuINT0007764 @ mm9
Intron Retention
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24433209-24436048:-
Coord C1 exon
chr17:24435898-24436048
Coord A exon
chr17:24433308-24435897
Coord C2 exon
chr17:24433209-24433307
Length
2590 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
AACCTTTATTTCCCATCTAGGTT
3' ss Score
9.25
Exon sequences
Seq C1 exon
GTGCAGGATACTATATGACTATAATAAAAACACCTCTCTGCGACACCTCAAAGCTCTCTGAAGTAATTTATCACCACATACCGAATGCAGTTTTGGAGTCCAACATTGGAGAAGAAATGATAGTCACACTTCCTAAGAAGACCATACACAG
Seq A exon
GTATAAACTGAGTCATTAGCACAGGCCCTCCATGGCCACAAAAATCCACATCCTTTACACATGCCCACATGCAAAATAGTCTTTCCTGTTACAGGATCAGTATAAGATTAGGGGCCTCATTATCTGAACTACGTATGGTATGGTTCTTGGGTTCACCTCATTGGCTATGGCTCCTTTTGAAGACTTGTGAATTAGAGAGGGATGCTTTCTGATCCAACTACACCAGAGGAGCTGAGCACGTAATGGCGATCATAAGAGACAGCATCATTCAAAAAGGGAAATAAAGGAAAATGCCACATACTAGTCTTCAGCAATTCTAAATTCTAGGTTGACATGAGTCTCATATTTCTGCTTTCTCAGGATCAGGGAATGCATATTGATAGTTTTGCTTCATAAGAGTGGTTTTATATATGTAAGTACACTGTAGCTCTCTTCAGATGCACCAGACCTCTACTCACTATGGTCTAAAGATTTATTTATGGGCTGGGCGGTGGTGGCGCACACCTTTAATCCCAGCACTTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGATTTATTTATTATTATAAATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTATGAACCACCATGTGGTTGCTGGGTTACTCGGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCACTCAACCATCTCCCCAGCCCCATAAGAGTGGTTTTAATCAGCCTTTCACTTCATCCACTGGCTGTTGACTCTGTCTTTTGCATTATCTCTTTTCCATACAAACTGGTGGATACAGCTGAATAGCTAGCTTCATTCATCTGCTCTTAGACAACAGAAGAATATGCCAGCTGGTCTAAGTGTTTTGTAGGTATGCTGTGTATCAGATTATGAAACACACACCCTTTTAAGCCTAAACCATACTCACAGTCTTGAGAACATGTCCTGCCATGCCACAGTTATTCACAAACACTCTCTCAGTCTTTCCTGATAACGCAGCTGAAGGTGCTACCAAGCCTTCTGCCATGGACTGCTAATCTCATTACTGTTCTCCTGCCTCCACCGAGGCCTCTCTTGAAGCCACTCCTGCCTTCACCTCACTGTCCTTGCCCCCAAAACATGACACGTGTTCTAGAATCTAGAAGGTTTAAAAAAAATAGTGCCACAGTGGCCTCTGGATCACTTGTACAATACTGGGTTCCTGAATTGCTCAACTCAAAAAATTCTGGCTTAAACTGGCAACTATTTTAGTGTTTCTCATGTTTTTCCCCACTTTGTCCTAGAGATTCAGCCCAAGTCCTTGCACATCTTGCCTAACCCTGCCCCCAGAAGACTCCTATGTCGGCTGTACTGAGCTGCATGGTTCTTCTGCCCCACATTAATTTTTTGCCTGGGGCTAGAATGATCTAGAATTTCCAAGGTGGCTCATTCTCACACCTGGGAAAATAGTGCTGGCTAACAACTGGGCTCTTACTAGAGCTGCTAACTGTAGCATCCAGTGCTCCACTGGGTTGTCTCTCAGATGATTTTGGCTTCTCCTAGGATGGCAGGCAGAATCCAAGAAAAGGCACTCCAAGAGGGACTGAAAAAAAAAGGGGGGTCAATTGTCCTGGCTGGTTTTGTGTGTCAACTTGACACAAGCTGGAGGTATCACAGGGAAAGGAGCCTCCCTCGAGGAAATGCCTCCATGAGATCCAGCTGTAAGGCATTTTCTCAATTAGTGATCAAGGGTGGGAGGGCCCATTGTGGGTGGTGCCATCCCTGGACTGGTAGTCCTGGGTTCTATAAGAAAGCAAGTTGAGCAAGCCAGGGGAAGCAAGCTAGTAAGGAACATCCCTCCATGGACTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGCTCCAGTCCTGACTTCCTTTGGTCATCAACAGCAGTGTGGGAGTATAACCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTTATGCAGGAATAGAAACCCTGACTAAGGCAGAGAGAAAGCCAGTCACTATTTTTTATGCCTGGGCTCAAAAATACCAAAACGTCACCTCTGTACTAGATATATTTTACATTTCTCCCCATAGGAACGTTCCAAAACAAATGCTATTACAAGTTTACTGAGATCTGAACAGATGTCTTGACAACAAACCCCACGTCTTCTCTGCTCTAGAAAGCTAAGGGTGGTAAAGAATTCACCTTCTATCTTTCAGAAATAAAACCTTTATTCCCCCCTGGGCTGGAGGGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGTTCACAACCAACTGTAATGGTATCTAATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATACATTAATAATAATAAACAAATAAGTATTTTTAAAAAAAGAACACTACCAAAACCTTTATTTCCCATCTAG
Seq C2 exon
GTTTGAGGCTCTATTCAATGACTTGGAACTGAGACAGACAGAGCTGGGAATCTCTACTTTTGCCACCTCTGTAACCACTATGGAGGAAGTGTTCATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-Abca17:NM_001031621:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: