MmuINT0008000 @ mm9
Intron Retention
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79467699-79468525:+
Coord C1 exon
chr10:79467699-79467838
Coord A exon
chr10:79467839-79468387
Coord C2 exon
chr10:79468388-79468525
Length
549 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTGCTACTCTCTCCGGCCAGGTG
3' ss Score
10.35
Exon sequences
Seq C1 exon
GCTGACAGTGGAAGAACATGTTTGGTTCTATGGCCGTTTGAAAGGCGTGAGTGCAGCCGCCATGGGCCCCGAGCGGGAACGTCTGATACGGGATGTGGGGCTTACCCTCAAGCGGGACACACAGACACGCCACCTCTCTG
Seq A exon
GTGAGCTGGCCTATAGAGGTTCCCTCCATGGTGGGGAGGGCATCAGGGACTGACTAGGGCACTGCAGAACACTCAAGTGGGGAAAGGAGACCATCTCTGGCCTGCATAGAGCTAGGTGGGTCACAGTAACAATGTCTCTCCTGCTGCTGTAAATATTATTTGGAGGTTTCTACCCCACCTTAGATCATTTTGTTCCCAAATAAAAGACACAAACCTTTATATTTATAATAAGTGTTAAAAGCATTAGAGCTGGGCAGATATCAACCCTCTGGGCTATTTTGTCTGCTTCCCTGTCGGGAACCCCAGAGATCTCTACCTCTGACCCCACACCCAGGAACAGAAGCCCCACCTCCCTCTCTTCTGCTCAGCTACAGCCTGTGGGCATTTTTATTAACCAATCACAGATAACTTGGGAGGGGGGCGAGTTTATACAACAAAAGCTGGTAGGCACGAGGATCTGCTCTTCTTGAAGCAGCCAGATCCTGGGATAGAGAATTCAGCATTTGAATACAAGCAGTGTCAGACCAACCTGCTACTCTCTCCGGCCAG
Seq C2 exon
GTGGAATGCAGAGAAAACTTTCTGTGGCCATTGCCTTTGTGGGTGGCTCTCGTGTGGTCATCATGGACGAGCCCACTGCTGGTGTGGACCCCGCTTCCCGCCGTGGCATTTGGGAATTGCTACTTAAGTACAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-Abca7:NM_013850:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(17.9=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACAGTGGAAGAACATGT
R:
CTTCTCTGTACTTAAGTAGCAATTCC
Band lengths:
278-827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: