RnoINT0010362 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12752079-12753010:-
Coord C1 exon
chr7:12752871-12753010
Coord A exon
chr7:12752217-12752870
Coord C2 exon
chr7:12752079-12752216
Length
654 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTACTACTCCTTCCAACCAGGAG
3' ss Score
8.07
Exon sequences
Seq C1 exon
GCTGACGGTGGAAGAACACGTTTGGTTCTATGGCCGTTTGAAAGGCGTGAGTGCAGCCGCCATAGACTCCGAGCAGGAACATTTGATTCGGGATGTGGGGCTCATCCCTAAGCGGGACACACAGACGCGTCACCTCTCTG
Seq A exon
GTGAGCTGGCCTCAAAGGCTCCCTCCATGGTAGGGAGTGGGGTGTAGGACAGCAGGGGCTGACCAGGGCACTGGTGTACAATCAGGTGGGGAAGGGAGGGTGCTCTGCACATAGCTGGGAAGGTCACATTAACAGTCGCTGCCTCCGGTTGCTGTAAATATTATTTGGGGGTTTCTATCCCACCTTAGATCATTTTGTTCCCAAACAAAAGACACAGAATCTTTAAATTTATAACAAGCCTTACAGCACTAGAGCTGGGCAGGTATCAGCTCTCTACGCCATTTTGTCTACTTCCTGTCAGTAACCCTGAGATATCACTGGCCACCTTCCATCTGGACCACTCGTTCTCCAACAGTCCACACTCCACTTCCTCCTCCCTCCCTCCTTCCTTCCTACCCTCCTCTCTCCTCCCCCCCTTTACCTCTGACCCCAAGCCAGGAACAGAAGTCCCACCTCCCTTTCTTCTGCTCAACTACAGCGGTAGGCATCTTTATTAACTAATCACAGATAACTTGGTGGGGGGGGGCAAGGTTTATACAAAAGAAGCTGGCATATGTGAGGCTCTGCTCATCTTGGGGCAACCAGATCTCGGGATGCAGAATTTAGCATTTGATACAAGCAGCATCAGACCAACCTACTACTCCTTCCAACCAG
Seq C2 exon
GAGGAATGCAGCGAAAACTTTCTGTGGCTATTGCCTTTGTGGGTGGCTCTCGTGTGGTTATCATGGACGAGCCCACTGCTGGTGTGGACCCCGCTTCCCGCCGTGGCATTTGGGAATTGCTACTCAAGTACAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(17.9=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACGGTGGAAGAACACG
R:
CTTCTCTGTACTTGAGTAGCAATTCC
Band lengths:
278-932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]