DreINT0000128 @ danRer10
Intron Retention
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5677636-5678393:+
Coord C1 exon
chr11:5677636-5677775
Coord A exon
chr11:5677776-5678255
Coord C2 exon
chr11:5678256-5678393
Length
480 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
CATTTTGTCTTTCTTGGCAGGTG
3' ss Score
11.46
Exon sequences
Seq C1 exon
TCTTACAGTGGAGGAGCATGTGTGGTTTTATGGTCGAATGAAGGGCATGAGCTTGGAGGAGGTGAACAAAGAGATGAATTCCCTTCTGGAGGATGTGGGCTTGCAACATAAACGATTTGAGCAGACCAAAAACCTTTCAG
Seq A exon
GTATAATGACAAATGTGACCCTGGAGCACAAAAGCAGTCTTATGTTGCACGGATATCTTTTGACAGAAACCAAAAATACATTGTGTGGGTTAAAATTATGGATTTTTCTTGTGTGCCAAAAATCATTAGGATATTAGTAAAGATCATGTTCCATTGAGATGTTTTGTACATTTACAACTGAAATTTATCAAAACTTGTCTTTTAATGAATAATATCCATTGCTAAGAGCTTAATTTGGACAAATTTGAAGGTGAATTTCTCATGATTTTGACTTCTAGACATATTAACCAAGAGTTGTACAGTCAATAGTTGTATCTTAGCTTTCAGATGATGTAAATCTCACTTTTAAAAAGTTGACTTAAGGTTTTGTGGTCCAGTCCAAAATATATTTCAGATCCTTTCAAGGGTTTGAATTATGTTGGTGTTCTCTAAAGTGTAAACTCTATAATTTAATTGAATGCATTTTGTCTTTCTTGGCAG
Seq C2 exon
GTGGCATGCAGAGGAAACTGTCGGTAGCAATTGCTTTCATAGGTGGGTCGAAGGTTGTGGTTTTGGATGAGCCTACAGCTGGTGTGGACCCTTACTCACGCCGTGGGATTTGGGACCTTTTGCTTAAATACCGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221:ENSDART00000165385:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(17.9=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTACAGTGGAGGAGCATGTG
R:
CTTCACGGTATTTAAGCAAAAGGTCC
Band lengths:
278-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]