HsaINT0000794 @ hg38
Intron Retention
Gene
ENSG00000064687 | ABCA7
Description
ATP binding cassette subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr19:1051155-1051586:+
Coord C1 exon
chr19:1051155-1051294
Coord A exon
chr19:1051295-1051448
Coord C2 exon
chr19:1051449-1051586
Length
154 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCCTTCCCCATCTCTACCAGGTG
3' ss Score
10.11
Exon sequences
Seq C1 exon
GCTGACCGTGGACGAGCACGTCTGGTTCTATGGGCGGCTGAAGGGTCTGAGTGCCGCTGTAGTGGGCCCCGAGCAGGACCGTCTGCTGCAGGATGTGGGGCTGGTCTCCAAGCAGAGTGTGCAGACTCGCCACCTCTCTG
Seq A exon
GTGAGCCCATCCCCAAGGGAGGTCACCTCACAGGGAGGGGCCTGGGGATTCATCCTGAAGGCAGGGGGAAGCCGGGTACTGAGGTCCACGTGGGTAGGCAACCTTGCCCAAGGCTGGGTGTGACACACTGAGGTCCCTTCCCCATCTCTACCAG
Seq C2 exon
GTGGGATGCAACGGAAGCTGTCCGTGGCCATTGCCTTTGTGGGCGGCTCCCAAGTTGTTATCCTGGACGAGCCTACGGCTGGCGTGGATCCTGCTTCCCGCCGCGGTATTTGGGAGCTGCTGCTCAAATACCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687:ENST00000433129:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(17.9=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTATGGGCGGCTGAAGG
R:
TCTCGGTATTTGAGCAGCAGC
Band lengths:
252-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development