GgaINT1005124 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2829832-2830196:-
Coord C1 exon
chr28:2830057-2830196
Coord A exon
chr28:2829970-2830056
Coord C2 exon
chr28:2829832-2829969
Length
87 bp
Sequences
Splice sites
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
3' ss Seq
CAACGCCCGCTCCCCCACAGGCG
3' ss Score
8.37
Exon sequences
Seq C1 exon
CCTGACGGTGGAGGAGCACATCTGGTTCTACGGGAGGCTGAAGGGGCTGGCGGAGGAGCAGGTGCAAGAGGAGATGGAGCAGCTGCTCCAGGACACGGGGCTGCCCCACAAGCGGCAAGAGCAGACCAGGAACCTGTCGG
Seq A exon
GTGTGTGGGCTGTGCCGTCCCTATTGCCATACCCATCATCAGCCAATCTCCATCCCAGTGCCGTCCCCAACGCCCGCTCCCCCACAG
Seq C2 exon
GCGGCATGCAGAGGAAGCTTTCTGTGGCCATTGCCTTTGTGGGCGGCTCCAAGGTGGTGGTCCTGGATGAGCCCACAGCCGGTGTTGACCCCTACTCACGCCGCAGCATCTGGGAGCTGCTGCTCAAGTACCGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(17.9=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGAGCACATCTGGTTC
R:
GCAATGGCCACAGAAAGCTTC
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]