BtaINT0011185 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45171870-45172368:+
Coord C1 exon
chr7:45171870-45172009
Coord A exon
chr7:45172010-45172230
Coord C2 exon
chr7:45172231-45172368
Length
221 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGACCCCTGTCCCAACCCAGGCG
3' ss Score
7.1
Exon sequences
Seq C1 exon
ACTGACTGTGGATGAGCACATCTGGTTCTATGGGCGGTTGAAGGGTCTGAGCGCAGCTGCCGTGGGTCCCGAGCAGGACCGGCTGCTGCAGGACATGGGGCTGATCCCCAAGAGGCATGCACAGACTCATCACCTGTCAG
Seq A exon
GTGAGCCTGGACTTGGGGGAGCCTCCAGGTCTGCAGAGATGAGGCTGGGGGGTGGTGCTGGGACTTTATATTGAGGACTGTGGGATGCCAGAGGAGATGGGCAGACTTGGGGACCCAGGAGGAATCAGGCACTGTGGTCCAGGTGGGTAGGGAAAGGTACAGGAAGAAGGGAGGCAGCCCTGCCCAAGACTGTGGAGATCTTGACCCCTGTCCCAACCCAG
Seq C2 exon
GCGGGATGCAGCGGAAGCTCTCAGTGGCCATTGCCTTTGTGGGTGGCTCCCAAGTTGTTATCCTGGATGAGCCCACAGCTGGTGTCGACCCCACTTCCCGTCGAGGCATCTGGGAGCTACTGCTCAAATATCGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(17.9=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACTGTGGATGAGCACAT
R:
CTTCACGATATTTGAGCAGTAGC
Band lengths:
278-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]