MmuINT0008054 @ mm10
Intron Retention
Gene
ENSMUSG00000041828 | Abca8a
Description
ATP-binding cassette, sub-family A (ABC1), member 8a [Source:MGI Symbol;Acc:MGI:2386846]
Coordinates
chr11:110042093-110043031:-
Coord C1 exon
chr11:110042966-110043031
Coord A exon
chr11:110042185-110042965
Coord C2 exon
chr11:110042093-110042184
Length
781 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
AACATCTCTCTTTCCCCTAGCCT
3' ss Score
8.8
Exon sequences
Seq C1 exon
AATCGTGAATTTTCTGAAATAATTTTTGAGCCAGAAAGGGAGTATTCCTATCTGTTTTTCCTAGCT
Seq A exon
GTAAGTATCCTTCTTGTTCAAATATTACTGCACACAGAAGCATTCTTACATACATGATGCAGGGTGCTTTCTTGATCATATTTTGGGTGGAAAAAAAAACAGTTCTGGAGATCAAACCCAGGACTTGTACATTTGTTACACAAATGTTCTGTCACTGATCAACACCCCAAGTCCTAGTTTGAAAATTAAGATGTTTCTAAGTATAGAGCCATTTTTTTAAAAAACAAATATCCAGTGACAACATCAATTGTACCTTCCAATTCTAGAGACATAGTAGAGAGTTGGGGAAATGGATTAATGGGTAAATTGCTTCTATGCAAGAGTCATGACTAGGGTGTATATGTCCAGTATTCACTTAAATGCTGGGTGGGCATGGTATCTCTGAATTAGAGATGGATGTCCCCTAGGCTAGCTGGCTAGCTGGACTGGCAGACCAACAAGGTCAAGTGAGAGATGCAGACTCCATTAATAAACTGAAGGGTAAGACATCTAATTTCCTCCTCTGCCCCCCCCATGCATCCATACACTCACACCAAACAAAGGTGCATCCTAAAGTATGGATGACGTTCAGAGCATAATATAATATAGGAGAGTGTGAACACTTGCACTGTGTCTGTACGAAGAACTGTAATTCATTTTGACTTGTTTGTAAGCAGATGAATGGCTAGCTCTTGCAATTTTAACCATTCTGTCCTGTACACATCTGTAGAAGGCTGTTTGCCATTTACTTCTGGTGTTGGCATTTGGTATTTCTAACTGAGAACATCTCTCTTTCCCCTAG
Seq C2 exon
CCTCTTCTTCATTTTGCCATCTTCGTAGTTATTCTCCGATGTATGGAAAGGAAGTTTGGAATGAAAACAATGAGAACGGATCCTGTCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041828:ENSMUST00000100287:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(5.9=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(2.5=29.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types