RnoINT0010454 @ rn6
Intron Retention
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98334211-98335181:-
Coord C1 exon
chr10:98335116-98335181
Coord A exon
chr10:98334303-98335115
Coord C2 exon
chr10:98334211-98334302
Length
813 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
AACATCTCTCTTTCTCCTAGCCT
3' ss Score
7.31
Exon sequences
Seq C1 exon
AATCATGAGTTTCCTGAAATAAGTTTGTACCCAGAAAGGTACTATACCTATCTGTTTTTCCTAGCT
Seq A exon
GTAAGTATCCTTCTTGTTCAAATATTACTGCACACAGAGAGACCTTTACCTAAGTAATGCAGGGTACTTTCTTGTTCATATTTTTGGTGAAAAAAAAACCAGTTCTGGAGATCAAACCATTTATACCTGTTACACAAATGTTCTGTCACTGATCAAACCCACTAGCCTTAGTTTGAAAAATAAAATGTTTTATGTAGCTAAGTCCCAGAAAAGCAATATGTTCCTAAGAAGGGAGCCATTTTTAAACAAATATCCAGTGACATAATAAATTGTACCTTCCAATTCTAAGGACGTAGTAGAGAGTTGGGGATATTGCTCAATGAATAAGTTGCTTCTGCGCAAGAGTCTGGACTAGGTACATGTCTCCAGTAATCACTAAAGTGCTGGATGGGCATGGCATCTCTGAATTAGAGATCGAGGTCCTCTAGACTAGTTGGCTAGTAAGACTGGGAGGACCAACAAGATCCGGATTCAAGTGAGAGATGCAGACTCCATTAATAAACTGAAGAGTGACTAAGAAAGACATCTAATTTCCTCCTCTCCCCCCCACCCGACCTGACACATATACCAAATAAAAGTGTATCCTAAAGCATTAATGAAGTTTAGAACACAATATAATGCAGAACAGCGTGAACTGTTTCTGTACAAAGAACTGTAATTCAATTTGACTTGTTTTGTAAGCAGATGAATGGCTAGTGCTTACAATTTTAACCATCCCATCCTGTATCTACCTGTAGAAGGCTGGTTGCGGTTTACTTCTGATGTTAATTAGCATTTGGTGTTTCTAACCGAGAACATCTCTCTTTCTCCTAG
Seq C2 exon
CCTTTCTTTCATTTTCTCATCTTCCTATTTATTCTTCGATGTCTGGAAAGGAAGTTTGGAATGAAAACAATGAGAATGGATCCTGTCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147:ENSRNOT00000005665:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(5.8=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(5.5=64.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]