GgaINT0129157 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8189805-8190375:-
Coord C1 exon
chr18:8190307-8190375
Coord A exon
chr18:8189897-8190306
Coord C2 exon
chr18:8189805-8189896
Length
410 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
3' ss Seq
TGGCAACCTCTTTTTTTCAGCCT
3' ss Score
5.86
Exon sequences
Seq C1 exon
ATCTTTATAGAAGACCCCAGCTTAACTGAAGGCATTTCAAACAACAACATACTCATAGCCATCTTTGCA
Seq A exon
GTAAGAAAACATTTAAGATTAATTCTATTTAGGGACGTGTGTCTCCGAGGTTGTATCCTCAGTTATGAGGAAGTGAGTTCATCTTACATAGAAGGAGGATCTTGGGGACACAGATGACAGATTACCCACCTGTGGTAAAAATAGTTTTGTTCCTTTGAAATGGAGAAGGGAAAAGGAAATAAGTCTAGGTGGCTTGATGCTTCTGTCGTTGATGTTTTCTGCAGTACTGGTAAATGATAGCAGAGTTCACGGCCTCCAGGATTACCCTGAGTTTAGATGGCAATGAACTTTAATTTCATATACTGTGTTTTTCCCCCCTGCATAGTTTATAACTCTGCCATCATCTTTTCAGCTTCAGCCACAGCAGAACGGAAGGCAGGTCTGTCAGTGTGGCAACCTCTTTTTTTCAG
Seq C2 exon
CCTTACATCCATTCTGTGGTTTTCGTTTTTCTCCTTCGTTATTTGGAGATGAAATACGGAAGGCCAGTTCTGAGACAGGACCCAATATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.2=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(3.7=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]