MmuINT0008092 @ mm10
Intron Retention
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109945767-109946307:-
Coord C1 exon
chr11:109946245-109946307
Coord A exon
chr11:109945859-109946244
Coord C2 exon
chr11:109945767-109945858
Length
386 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGG
5' ss Score
4.89
3' ss Seq
CCCCCCCCCCTCTCTCCCAGCCT
3' ss Score
8.85
Exon sequences
Seq C1 exon
CTTTTCATAGGTCAAATCTTTGAAGAAGGACAAGTTATAGAGCCATTCCTGGTATTCCTCATT
Seq A exon
GTAAGGATGTATTCTTTTTACTGAGTTCTAAATCATACTCAACAATGTTAATTTATGCTGTGTTTTTACTAATATAGAGACAAGATTTTCATAATACATACAAATATAGTATTTGTAAAGTCAGAGACAACTATTTTTATAAAGATTAATTTACAAGATAATTACTTGCCTAATATTAAGAACACTTGTACCTGTGATAGAAAAAAATTATAGTCCATAATTATAGCTGATTTGTAATGAAAATGAATGATTTCCAAATGTGCCAAGGAGGGTTTGGAAATTTAAATTGTTATTCAACTCTTGTCAAGAATTATACTAGTTCACTTCATACTAAGGCAGTGATCGTTTTGTGCTTTCTAATGCATTCCCCCCCCCCTCTCTCCCAG
Seq C2 exon
CCTTTCCTTCATGTTTTCATTTTTATTTTTACCCTTCGATGTCTGGAATGGAAGTTTGGAAAGAAAACAATGAGGAAAGATCCCATCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620:ENSMUST00000020948:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.2=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(3.9=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types