RnoINT0010416 @ rn6
Intron Retention
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98251680-98252247:-
Coord C1 exon
chr10:98252185-98252247
Coord A exon
chr10:98251772-98252184
Coord C2 exon
chr10:98251680-98251771
Length
413 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGG
5' ss Score
4.89
3' ss Seq
TCTCTCTCTCTCTCTCGCAGCCT
3' ss Score
12.24
Exon sequences
Seq C1 exon
CTTTTCATATATCGGATCTCTCGTGAAGAATCAATTGTAGAGCCATTTCTGGTATTCCTCATT
Seq A exon
GTAAGGATGGGTTCTAATTCATACTCAGCAACTTTAATTCATTGACATTCAATTTTTATTAACATAGAGATGAGATTTTCATAATATATACAAATATAATATTTGTAAAGTCAGAGACAACTATTTTTATAAAGATTAGCTGACAAGATAATTACTTGCCAAATATGAAGAACTTTTGTACCTGTGGTAGAAAAAATTATAGCCCACAATTATAGCTGATTTGTAATGAAAATGAATGATTTCCCAATGTTCCATGGAGGATGTTAGAAATTTATAATGTTATCAAATATAGCTCTCGCCAAGAATTATTCAATTATTCCTAGTTCACTTCATACTAAGATAATGATCTTTTGTGTTTTCTAATGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCAG
Seq C2 exon
CCTTTACTTCATGTTTTCATTTTTATTTTTACCCTTCGATGTCTGGAATGGAAGTTTGGAAAGAAAACAATGAGGAAGGATCCCATTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040:ENSRNOT00000005489:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(9.8=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(5.9=38.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]