MmuINT0010483 @ mm9
Intron Retention
Gene
ENSMUSG00000054808 | Actn4
Description
actinin alpha 4 [Source:MGI Symbol;Acc:MGI:1890773]
Coordinates
chr7:29696509-29697340:-
Coord C1 exon
chr7:29697259-29697340
Coord A exon
chr7:29696595-29697258
Coord C2 exon
chr7:29696509-29696594
Length
664 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCCTTGTTGTTCACTTACAGACA
3' ss Score
9.9
Exon sequences
Seq C1 exon
GATGATCCAGTCACCAACCTAAACAATGCATTTGAAGTGGCTGAGAAATACCTCGATATCCCCAAGATGTTGGATGCTGAGG
Seq A exon
GTGAGTACCTCCCCTGTGTTCAGTCAACACCATGTTTCCTTGGGCCTTGTCTCTCTGGACCTAGCCTTCGCTGGGTCCACAACTCATCAAAGCCTCAAGAAAACCTTGGGGAGCTGGCTGGCTGAGCCAGGGTGAAAGGCTGCTGAGCTTGGTATGGCCAGATGCAGTCAGAATAGCAGAAAAGGGAGGGTAGGGTGGTCAGTGCTTAAAGGGTCAATTTTCTCTGGTACCACAGAAGGGGCAAGGAGGCTGGCTTCCTGTGAACAGCCCTGGCCTTTCTCCTGACCAGCCAAAGGCCTGGGCTCTGGAGCCTGCCGAAGTGGAATGTTGTTTTTTCCTTTTCCGGCTTTGCTCCATTTCCCAGCCAGCACCACCCCCAGCAGGACCCATGTCTCTGGCCTCTGGTGGCCTTTGGAGTTCAGTGTCCTGCAGCCCCTTGAGGCCATTCTCAGAGAAAGGAAGTGGCTTCCCTCCAGCTCAGTCCCACAGCACAGCACAGGCCTTTCCTGAGACCATGGGGAGGCTAGGGTGTGACTGAGCACGGCTGTGGCGGAATCAGCTTAGAGGGGCTCCCCTGGCTGAGTTGTGGCTTTGGGAGCCTGTGGGTCCTAACAAGTGATCTCACCCCTGCTTGGGCCATTTAACCCTTGTTGTTCACTTACAG
Seq C2 exon
ACATCGTGAACACAGCCCGGCCCGACGAGAAGGCCATAATGACATATGTGTCCAGCTTCTACCATGCCTTTTCAGGAGCGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054808-Actn4:NM_021895:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.138
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
NA
C2:
PF0030726=CH=PD(23.1=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: