RnoINT0012663 @ rn6
Intron Retention
Gene
ENSRNOG00000020433 | Actn4
Description
actinin alpha 4 [Source:RGD Symbol;Acc:61816]
Coordinates
chr1:87096526-87097381:-
Coord C1 exon
chr1:87097300-87097381
Coord A exon
chr1:87096612-87097299
Coord C2 exon
chr1:87096526-87096611
Length
688 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCCTTGTTGTTCACTTACAGACA
3' ss Score
9.9
Exon sequences
Seq C1 exon
GATGATCCAGTCACCAACCTAAACAATGCATTTGAAGTGGCTGAGAAATACCTTGATATCCCCAAGATGTTGGATGCTGAGG
Seq A exon
GTGAGTACCTCCCCTATGTTCAGTCAACACCATGCTACCTTTGGCCTTATTTATCTCTCTGGACCTAGCTTTGGCTGGGCTCCACAACTCATCAGTTTCCAGAAAACCACGGGAGCTGGCTGGCTGAGCCAGGGTGAAAGGCTGGGTGAACCTGGGGTGGTCAGACACAGTCAGAATAGCAGAAAAGGGAGGGTGGCCAGTGCTTAAAGGGTCAATTTTCTAGTACCACAGAGGGGGCAAGGAGGCTGAAGAGGCCAGCTCCCGGCTTCCTGTGAACAACCCTGGCCTCTCTCCTGACCAGCCAAAGGCCTGGGGTCTGGAGCCTGCTACAGTGGAATGTTGTTTTTTCCTTTTCCGGCTTTGCTCCATTTCCCAGCCAGCACCACCCCCAGCAGGACCCGTGTCTCTGGCCTCTGGTGGCCTTTGGAGTTCACTGTCCTGCAGCCCCTTGAGGCCATTCTCAGAGAAAGGAAGTGGCTTCACTCCAGCTCAGTTCCCACAGCGGTGGCCTTTCCTGAGACTGTGGGGGAGGTTAGGATGTGACTGAGCCCATCCAACTGAACAACTATTGTTGAATCAGCGAGAGGGTCTTCCCCCGTGCAGTTGTGGCTTTAGGAGCCTGTGCGTCCTAGCAAGTGATCTCACCCCTCCCTGCTTGGGCCATTTAACCCTTGTTGTTCACTTACAG
Seq C2 exon
ACATCGTGAACACAGCCCGGCCCGACGAGAAGGCCATAATGACATATGTGTCCAGCTTCTACCATGCCTTTTCAGGAGCGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020433:ENSRNOT00000027773:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
NA
C2:
PF0030726=CH=PD(23.1=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]