BtaINT0013369 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011215 | ACTN4
Description
Bos taurus actinin, alpha 4 (ACTN4), mRNA. [Source:RefSeq mRNA;Acc:NM_001098052]
Coordinates
chr18:48721584-48722473:+
Coord C1 exon
chr18:48721584-48721665
Coord A exon
chr18:48721666-48722387
Coord C2 exon
chr18:48722388-48722473
Length
722 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CCCTTGTCGTTCACTTACAGACA
3' ss Score
9.33
Exon sequences
Seq C1 exon
GACGACCCCGTCACCAACCTGAACAATGCCTTCGAAGTGGCTGAGAAATACCTCGACATCCCCAAGATGCTAGATGCAGAGG
Seq A exon
GTAAGTACATCGCTCTTGCTCTTGTCAGCACGCTGTTTTACGGGCATGTCTTGGGGTGACCTCGGAGCTGGCGGAGCCAGCCGGAACGCCTGAGCAAATCTGCTCGAACCGGGAATAATGGTGTCGTCACCCAGGGCGCCCAGGCGGGAGCAGCCTGGGTTGGAGTTGGTGGGGAAGGGGTCTTTGAAGGGACCAGCTCTTAGGGCCGCCCCTGGGGCCTGGGCCCCGGCACCCCCGCCATAGCCCTTCCTGACTGGTCCCGCCCCTCAGTCACTGGGAGGGTCGGCTTCTGTGAATAACCAAGGCCTCCACCTTCCTGCCTGCCACAGGCTAGGGATCTGGAGCCCACAGAGTGGAATGTTGTTTTCCTTTTCCGGCTTTGCTCCGTTTCCCAGCCACGCACCACCCCAGCCAGGACCCCCGCCTCTGGCCTCTGGCGGCCCCTGGGGCTGACCGTCTACCAGCCCCTTGAGGCCGTTCTCAGAGAGAGGAAGTGGCCTCGTCTTAATCGCATTTCCCACAGCCTTGGCCTTTCCGGTGACCATGGGGGATGGAGGGGCCAAGGGGCTGGCCAAGCCCACTGGAGTTGCCCAGGGTCATGGAATCGGCTCCGAGGGTCCTTCTCCCAGGACTCCTGCTGTGGCCTGGGGAGCCCGTGCATCTCCGTGAGCGCCCGTCCCCACCCCCGCTGGGGCAGTTTAACCCTTGTCGTTCACTTACAG
Seq C2 exon
ACATCGTGAACACGGCCCGGCCCGACGAGAAGGCCATAATGACCTATGTGTCCAGCTTCTACCATGCCTTTTCGGGAGCGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011215:ENSBTAT00000014894:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
NA
C2:
PF0030726=CH=PD(23.1=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development