GgaINT0004890 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:38546836-38547745:-
Coord C1 exon
chrUn_random:38547664-38547745
Coord A exon
chrUn_random:38546922-38547663
Coord C2 exon
chrUn_random:38546836-38546921
Length
742 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
CTCCCTCTCTCTTTGCACAGATA
3' ss Score
11.1
Exon sequences
Seq C1 exon
GATGACCCCGTGACCAACCTGAACAACGCCTTTGAGGTGGCAGAGAAGTACCTGGACATCCCCAAGATGTTGGATGCCGAGG
Seq A exon
GTAAGCTGCACATCCGCACGCAACAAGCGCTGGAGCTCAGCTGGCACATCTCCTCCTGCAGACACAGAGGACGTGCTGGCAGCCAGCCCCGCTGGGCGCCGTGCGTTGGGACGCTGTAATCACCTTCTGCCCATACAGGAGTGTTTATTTAGCCTGCCTGCCTGTGGGATGCACACCGCAGCTCCCGGTCCCGGCGTGGTGAGCGGCTCCGGCTCGCAGGGTGCGCTCCCCTCTCATCCTAACCCTCACTGTTCACTTACAGACATTGTCAACACAGCTCGCCCCGACGAGAAGGCCATCATGACTTACGTGTCCAGCTTCTACCACGCCTTTTCAGGGGCTCAGAAGGTACCGGGCGGGCTGCGTCCGTCGTGCCGTAACCGCAGCACCGCACGCTCACGCACTTCTCTTCCAGCTGGCCGCTGCCTCTCGCTGACTGGGAACCAGACCTCAGCTCCTTCACACGGGTTTAAGGGCTGCTCACATTCCCAGCGTGATCTGTAAGGCGATGCCAAGCGCTGGCACGGCCCCAGCACAGGGCAGGACGGCTCTGCAGAGCCGCTCGCATGGAAACACAGCCTGGGCCCTTTGCACAAGGCTGAGTAATCCAGCAGCAAACACAACCCGTCAGCCAGCTCTGGTCTGGGCCCCCAGCGCTTCTCTCTGCCACTGCATGCTCCAAGGGCTCAGAGGTCGCCGTGCTGCTCCCTTCACGCTCTCTCCTCCCTCTCTCTTTGCACAG
Seq C2 exon
ATATTGTAGGCACTCTCAGGCCCGATGAGAAGGCCATCATGACATACGTTTCCTGCTTCTACCACGCTTTCTCGGGGGCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014305:ENSGALT00000023128:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(29.3=100)
A:
NA
C2:
PF0030726=CH=PD(26.1=82.8)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]