MmuINT0051786 @ mm10
Intron Retention
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21489743-21490669:+
Coord C1 exon
chr9:21489743-21489794
Coord A exon
chr9:21489795-21490657
Coord C2 exon
chr9:21490658-21490669
Length
863 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
CTAACTTTACATTCTCAAAGGGG
3' ss Score
4.2
Exon sequences
Seq C1 exon
TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGGGCCATACCCAATCAG
Seq A exon
GTAGCTCCCCAGTCTCTGCTGTCACTCCCTTCTGAAGACAGGAGCATACTTAGCTCATCATAGCATTTGATATGGGAACCGACTCCTTAGTACTAGGCTGCTCTGTCAGCTTCTGGGTCATGTAGCTGTTAGAACTAAGGCTTCCACAGGACCTTGGGGCAAATTGCAAACACCCAAAGGCCTCATCTGACATCTAATGTGAAAGTTACAACTTGACCCTCAAAGCAGGAGATGTGTTACAGTGACCCCGAGGTGTATGTTTTCTAACTCTTGGCCCCAGGAATGAAGGCAGGTAGGTAGAAACCATGGAAAGTGCCACAGGCAACTCAGGGAAGATGGGGATGGTTTGAATGCCACGGCTGGAGAACCCCAGGCCTCCTTTATAATCCCACCCCAGCTTCAGAGGCTTCGCATACTTACAGATGGCTTCAGAGATGCCAGTATTACGTGTCTGGTTGGGCTTGTTTTTCTGTCCAGTTTCTGCACTGTCCCCCAATTCCCTTCCCATGTCAGACTGGGGTGGGGATGGGGCGCTGTGCTGTTTTATCTTGCACGATTTAGAGCCAGATGGGGAGAAATGTAACAAATGCATGATTTTGAGTTTTCTTTTTGTATGTGTGCTTGCCATAGGTAGTACATATGTTGTTGCTTTTTTTTGTTTTGATGAAGATAATGAATTAAATATTAACACCATGAATATAATTAATAGCATGTAATTTTTTTCTTTTGCTGTTTTTTTGTTCCTCTGATCTTCCTTCTCCTACCCTTGTGCTTTCCCTGCGTTCTCTCTGTCCCTACACGCCCCTTCCATCTCTCCTGCTCTCCCTTGATTGACCCACAACCCTAACTTTACATTCTCAAAG
Seq C2 exon
GGGGAGATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335:ENSMUST00000165766:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.1=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types