MmuINT0051786 @ mm9
Intron Retention
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21294187-21295113:+
Coord C1 exon
chr9:21294187-21294238
Coord A exon
chr9:21294239-21295101
Coord C2 exon
chr9:21295102-21295113
Length
863 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
CTAACTTTACATTCTCAAAGGGG
3' ss Score
4.2
Exon sequences
Seq C1 exon
TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGGGCCATACCCAATCAG
Seq A exon
GTAGCTCCCCAGTCTCTGCTGTCACTCCCTTCTGAAGACAGGAGCATACTTAGCTCATCATAGCATTTGATATGGGAACCGACTCCTTAGTACTAGGCTGCTCTGTCAGCTTCTGGGTCATGTAGCTGTTAGAACTAAGGCTTCCACAGGACCTTGGGGCAAATTGCAAACACCCAAAGGCCTCATCTGACATCTAATGTGAAAGTTACAACTTGACCCTCAAAGCAGGAGATGTGTTACAGTGACCCCGAGGTGTATGTTTTCTAACTCTTGGCCCCAGGAATGAAGGCAGGTAGGTAGAAACCATGGAAAGTGCCACAGGCAACTCAGGGAAGATGGGGATGGTTTGAATGCCACGGCTGGAGAACCCCAGGCCTCCTTTATAATCCCACCCCAGCTTCAGAGGCTTCGCATACTTACAGATGGCTTCAGAGATGCCAGTATTACGTGTCTGGTTGGGCTTGTTTTTCTGTCCAGTTTCTGCACTGTCCCCCAATTCCCTTCCCATGTCAGACTGGGGTGGGGATGGGGCGCTGTGCTGTTTTATCTTGCACGATTTAGAGCCAGATGGGGAGAAATGTAACAAATGCATGATTTTGAGTTTTCTTTTTGTATGTGTGCTTGCCATAGGTAGTACATATGTTGTTGCTTTTTTTTGTTTTGATGAAGATAATGAATTAAATATTAACACCATGAATATAATTAATAGCATGTAATTTTTTTCTTTTGCTGTTTTTTTGTTCCTCTGATCTTCCTTCTCCTACCCTTGTGCTTTCCCTGCGTTCTCTCTGTCCCTACACGCCCCTTCCATCTCTCCTGCTCTCCCTTGATTGACCCACAACCCTAACTTTACATTCTCAAAG
Seq C2 exon
GGGGAGATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335-Dnm2:NM_001039520:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(11.5=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: