RnoINT0049842 @ rn6
Intron Retention
Gene
ENSRNOG00000007649 | Dnm2
Description
dynamin 2 [Source:RGD Symbol;Acc:2513]
Coordinates
chr8:22521892-22522815:+
Coord C1 exon
chr8:22521892-22521943
Coord A exon
chr8:22521944-22522803
Coord C2 exon
chr8:22522804-22522815
Length
860 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
CTAACTTTACATTCTCAAAGGGG
3' ss Score
4.2
Exon sequences
Seq C1 exon
TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGGGCCATACCTAACCAG
Seq A exon
GTAGCTCCCCAGTCTCTGCTCTCACTCCCTTCTGAAGTTCTGAAGGCAGGAGCATACTTAGCTCCATAGCATTCCATATGGGACCGACACCTCAGCACTAGGCACTCATGCTGTCAGCCTCTGGGCCACATAGCTGTGGGAGCTTGGGGCAAATTCCTAACACAAAGGCCTCATCTGACTTCTAATGTGAAAGTTACTACTCGACCCTCAGAGCAGGACATGTGTAACAGTGACCCTGAGCCGTATGCAAGCAAATTGTGTTTTCTAACGCTTGGCCCCAGGAATGGAGGCAGGTAGGTAGAAACCAGGGAAGGTGCCACAGGCAGCTCAGGGAAGATTGGGGTGGCCTGACCCCACCCCCGGGGAACCCCGGGTTTTCTTTATAACCCACCCCAGCTTCAGAGGCTTTGCACACTTACAGATGGCTTCATAAATGCCAGTACTACATGTCTGGTTGGGCTTTTTTTCTGTCCAGTTTCTACCACTGTCCCCCAATTCCCTTCCTATGTCAGGCTGGGGTGGGGGTGGGGTGCTGTGCTATTGTACCTTGCACGATTTAGAACCAGATTGGGGAGAAATGTAACAAATGCATGATTTTGAGTTTTCTTTTTGTATGTGTGCTTGCCATAGGTAGTACATATGTGGTTGCTTTTTTTGTTTTGAAGAAGATAATGAATTAAATATTAACACCATGAATATAATTAATAGCATGTAATTTTTTCTTTTGCTGTTTTTTGTTCCTCTGCTCTTCCTTCTCCTGCCCTTGTGCTTTCTCTGCTTCCTCTCTGTCCCTTCACGTCCCTTCCATCTCTCCTGCTCTCCCTTGATTGACCCACAACCCTAACTTTACATTCTCAAAG
Seq C2 exon
GGGGAGATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007649:ENSRNOT00000010947:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.1=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]