MmuINT0059853 @ mm9
Intron Retention
Gene
ENSMUSG00000039356 | Exosc2
Description
exosome component 2 [Source:MGI Symbol;Acc:MGI:2385133]
Coordinates
chr2:31533971-31535499:+
Coord C1 exon
chr2:31533971-31534147
Coord A exon
chr2:31534148-31535370
Coord C2 exon
chr2:31535371-31535499
Length
1223 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCTTTGTGTCCTTGTGTAGCCC
3' ss Score
9.25
Exon sequences
Seq C1 exon
CTAGGTCAGGGAGTTTTAGTCCAGGTCTCGCCTTCCCTGGTGAAAAGACAGAAGACTCATTTCCATGACTTGCCATGTGGTGCCTCAGTGATTCTGGGTAACAACGGTTTCATCTGGATCTACCCAACACCTGAGCACAAGGATGAGGATGCTGGGGGCTTCATTGCTAACTTGGAG
Seq A exon
GTGAGTGAACATCATCTTGGCATTCAGTGAGCGCTTTTACCTGCTGCGCCCTGTTGCCTTTTAGTGTATCAATAGTCTTGTGCCACCGAGGATGCTTTCTGAGAAATTAGTGTAGAGCACTCTTAAGTGAACTCACAGAGATGTTGCAGCATCTCAGCGGTGGTGTCTTGGGAAGCCACCTCTCTGCGTGAGCTGCAGATGGTTGCTTGTGGCTTGTGGTTTGCTCGCTGTCTGATGCAGTGCCTGCAGAAATGGCTGTGCTTTGAACAGGTCTGAGCTAGTTATTCATGAGCACTTAAGAGTCTCCTCTTCTGGGCTGGAAAAATGGCTCAGTGGTTAAGAGACTGCTCTTCCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGGCTCACAGCCATCTGTCATAGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTATCATGTGACTAAAATAAATCTTTTTTATTTTGTTTTGTGGGGTTTGTTTTTTGTTTTTTATTTTTTTGGTTTTTTTGGTTTTTTTCCAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGTCCAGGCTGACCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACCACCCGGAAAAATAAATAAATTTAAAAAAAAAAAAAAAAGGGTCTCCTCTTCTCTGAAGAGACAGACTCGGTGGCTTTGAACTTGAGCTTTGCTGGTGAACATCGCAAAGTTGCAGGGTAACAGCCAAACAGCCACTGCAGAGGTAACAGGGAGCGCGGAGATGGCTCAGTTGGTAAAGCACTTCCATTGTGAGCATGAGGAAGTGGGTGACAATGTCAGGTTTGGAGGTGTACATGAAATCCCAGCACTGGGGAGGTGGAGGTAGGACCACCCCTGGGACTTGCCGATAAGACAAAGGAGGTGGATGGCGTTCTTAGGATGATGCTCAAGGTTGGCCCCTGACCTCCACGTGCATTTGAACTTAGGAGCATATGCATACATGAAGTTGTACGTGTACACATTTAAAAAGTGAACAATTCCACGGTTTGTTGTTTGGGGGACATGAGGTTCCATGGTGGAAATGTGATTTCTCTCTTCTGTGGCTTCTGTGGCTGTTTGCTTATCTGATCCTGTTTGTATTTTTTTTCCCTTCCTCTTTGTGTCCTTGTGTAG
Seq C2 exon
CCCGTAGCTCTTAGTGATCGAGAGGTGATCTCCCGGCTTCGGAACTGTGTAGTCTTGCTGGTAACTCAGAGAATGATGCTGTTCGACACCAGCATCCTGTACTGCTATGAGGCCTCCCTTGCGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039356-Exosc2:NM_144886:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGGGAGTTTTAGTCCAGG
R:
CTGATGCGCAAGGGAGGC
Band lengths:
303-1526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: