HsaINT0058834 @ hg19
Intron Retention
Gene
ENSG00000130713 | EXOSC2
Description
exosome component 2 [Source:HGNC Symbol;Acc:17097]
Coordinates
chr9:133577521-133578568:+
Coord C1 exon
chr9:133577521-133577697
Coord A exon
chr9:133577698-133578439
Coord C2 exon
chr9:133578440-133578568
Length
742 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCTCTGTGTCTCCTTATAGCCT
3' ss Score
11.21
Exon sequences
Seq C1 exon
CTAGGTCAGGGGGTTTTGGTCCAGGTTTCCCCCTCCCTGGTGAAACGGCAGAAGACCCACTTTCATGATTTGCCATGTGGTGCCTCAGTGATTCTCGGTAACAACGGCTTCATCTGGATTTACCCAACACCTGAGCACAAAGAAGAGGAAGCAGGGGGCTTCATTGCAAACCTGGAG
Seq A exon
GTGAGCAAACACTGTGGCCATTTTCAGTGGGATGGAGGGGGCTCAGTCTTTGCTGTGTTTTTGTGGCCAGTGAAGTTGGTTGTTTTTAGCTATGTTACTGGTGTAGGCTGAGTCACTTTGACTTTCCATCACGGTATGTTCATGAAGCCCATATTATCTTCTCTTCTAAGGAGATGAATTCAGTGAATGGTTTGGTGTTTGTTGGTGGAGGTGGCAAAGTTGCAGGGTAATAGCCGAAGAGCCAGTGAAGAAGCCATTCTTTTTCTGTTTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCCATCTCGGCTCACTGCAAGCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCCCCACCATGCTCTGCTAATTTATCTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTTGAATTCCTGACCTTGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGACATGAGACACTGCACCCTGCCCCATTCCTTTTAATCTCCCTTGGAATTAGCTGTTTGGTTGATTTGGAGTTCCAGGGTGATACTGTCTGAGTCATAAATGATTTATTTGTGAATTTCTGTGGCTGGTCACGTATTTTGGTCCTGTTTGTATTTCCCTTCCCCTCTCTGTGTCTCCTTATAG
Seq C2 exon
CCTGTCTCTCTTGCTGATCGAGAGGTGATATCCCGGCTTCGGAACTGCATCATCTCGCTGGTAACTCAGAGGATGATGCTGTATGATACCAGCATCCTGTACTGCTATGAAGCATCCCTTCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130713-EXOSC2:NM_014285:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGTCAGGGGGTTTTGGTCC
R:
TGATGTGGAAGGGATGCTTCA
Band lengths:
304-1046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)