BtaINT0058646 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048071 | EXOSC2
Description
Bos taurus exosome component 2 (EXOSC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046561]
Coordinates
chr11:101004889-101005595:+
Coord C1 exon
chr11:101004889-101005065
Coord A exon
chr11:101005066-101005466
Coord C2 exon
chr11:101005467-101005595
Length
401 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTGTTTGCCTCCCCTGGTAGCCG
3' ss Score
7.71
Exon sequences
Seq C1 exon
CTAGGTCAGGGCGTTTTGGTTCAGGTCTCCCCCTCCCTGGTGAAACGGCAGAAGACCCACTTCCATGACCTGCCGTGCGGCGCCTCAGTGATCCTGGGCAACAACGGCTTCATCTGGGTCTACCCAACCCCCGAGCACAAAGAAGACGATGCAGGGGGCTTCATCGCAAACCTGGAG
Seq A exon
GTGAGCACACTCCGCCCACCGTTGCCCTTTTGGGATGGAGAGGCACTGAATGGGTACTGTGCTTCAGCGGCAGGGGCGGGCACTCTCTGTTTCTCCCTGCTGCGTGGCGGTAGTTAGAGCTGGTTTGCATTTCCACTGAAGTCTGCTCAAAACATCGTGCTGCCCTCTCTTGTTCTGGAGAGATGAAATCAGCGACTTTGATCTCTGTTGGCCCAGATGGCAGTTGCAGGGTAACAGCCAAAAAGCCACTGGAGGTGCCATCCTTTTTCATCTTCCTTGGAGTCAGCAGTTTGCTTGGTTTGGAGTCCCAGCGTGATCCCGCCTCAGCTGTAAGTGGGTCCTGTGATCTGCTGTAACCGTTCACTCGTTCTGGTCTTGATTCTGTTTGCCTCCCCTGGTAG
Seq C2 exon
CCGGTCTCCCTTACTGATCGAGAGGTGATCTCCCGGCTCCGGAACTGCATCGTCTCACTGGCAACTCAGAGGATGATGCTCTATGACACCAGCATTCTGTACTGCTATGAAGCATCCCTTCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048071:ENSBTAT00000063775:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGTCAGGGCGTTTTGGTT
R:
TGATGTGGAAGGGATGCTTCA
Band lengths:
305-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development