HsaINT0058834 @ hg38
Intron Retention
Gene
ENSG00000130713 | EXOSC2
Description
exosome component 2 [Source:HGNC Symbol;Acc:HGNC:17097]
Coordinates
chr9:130702134-130703181:+
Coord C1 exon
chr9:130702134-130702310
Coord A exon
chr9:130702311-130703052
Coord C2 exon
chr9:130703053-130703181
Length
742 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCTCTGTGTCTCCTTATAGCCT
3' ss Score
11.21
Exon sequences
Seq C1 exon
CTAGGTCAGGGGGTTTTGGTCCAGGTTTCCCCCTCCCTGGTGAAACGGCAGAAGACCCACTTTCATGATTTGCCATGTGGTGCCTCAGTGATTCTCGGTAACAACGGCTTCATCTGGATTTACCCAACACCTGAGCACAAAGAAGAGGAAGCAGGGGGCTTCATTGCAAACCTGGAG
Seq A exon
GTGAGCAAACACTGTGGCCATTTTCAGTGGGATGGAGGGGGCTCAGTCTTTGCTGTGTTTTTGTGGCCAGTGAAGTTGGTTGTTTTTAGCTATGTTACTGGTGTAGGCTGAGTCACTTTGACTTTCCATCACGGTATGTTCATGAAGCCCATATTATCTTCTCTTCTAAGGAGATGAATTCAGTGAATGGTTTGGTGTTTGTTGGTGGAGGTGGCAAAGTTGCAGGGTAATAGCCGAAGAGCCAGTGAAGAAGCCATTCTTTTTCTGTTTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCCATCTCGGCTCACTGCAAGCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCCCCACCATGCTCTGCTAATTTATCTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTTGAATTCCTGACCTTGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGACATGAGACACTGCACCCTGCCCCATTCCTTTTAATCTCCCTTGGAATTAGCTGTTTGGTTGATTTGGAGTTCCAGGGTGATACTGTCTGAGTCATAAATGATTTATTTGTGAATTTCTGTGGCTGGTCACGTATTTTGGTCCTGTTTGTATTTCCCTTCCCCTCTCTGTGTCTCCTTATAG
Seq C2 exon
CCTGTCTCTCTTGCTGATCGAGAGGTGATATCCCGGCTTCGGAACTGCATCATCTCGCTGGTAACTCAGAGGATGATGCTGTATGATACCAGCATCCTGTACTGCTATGAAGCATCCCTTCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130713:ENST00000372358:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGTCAGGGGGTTTTGGTCC
R:
TGATGTGGAAGGGATGCTTCA
Band lengths:
304-1046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development