MmuINT1009844 @ mm10
Intron Retention
Gene
ENSMUSG00000039356 | Exosc2
Description
exosome component 2 [Source:MGI Symbol;Acc:MGI:2385133]
Coordinates
chr2:31678451-31679979:+
Coord C1 exon
chr2:31678451-31678627
Coord A exon
chr2:31678628-31679850
Coord C2 exon
chr2:31679851-31679979
Length
1223 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCTTTGTGTCCTTGTGTAGCCC
3' ss Score
9.25
Exon sequences
Seq C1 exon
CTAGGTCAGGGAGTTTTAGTCCAGGTCTCGCCTTCCCTGGTGAAAAGACAGAAGACTCATTTCCATGACTTGCCATGTGGTGCCTCAGTGATTCTGGGTAACAACGGTTTCATCTGGATCTACCCAACACCTGAGCACAAGGATGAGGATGCTGGGGGCTTCATTGCTAACTTGGAG
Seq A exon
GTGAGTGAACATCATCTTGGCATTCAGTGAGCGCTTTTACCTGCTGCGCCCTGTTGCCTTTTAGTGTATCAATAGTCTTGTGCCACCGAGGATGCTTTCTGAGAAATTAGTGTAGAGCACTCTTAAGTGAACTCACAGAGATGTTGCAGCATCTCAGCGGTGGTGTCTTGGGAAGCCACCTCTCTGCGTGAGCTGCAGATGGTTGCTTGTGGCTTGTGGTTTGCTCGCTGTCTGATGCAGTGCCTGCAGAAATGGCTGTGCTTTGAACAGGTCTGAGCTAGTTATTCATGAGCACTTAAGAGTCTCCTCTTCTGGGCTGGAAAAATGGCTCAGTGGTTAAGAGACTGCTCTTCCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGGCTCACAGCCATCTGTCATAGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTATCATGTGACTAAAATAAATCTTTTTTATTTTGTTTTGTGGGGTTTGTTTTTTGTTTTTTATTTTTTTGGTTTTTTTGGTTTTTTTCCAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGTCCAGGCTGACCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACCACCCGGAAAAATAAATAAATTTAAAAAAAAAAAAAAAAGGGTCTCCTCTTCTCTGAAGAGACAGACTCGGTGGCTTTGAACTTGAGCTTTGCTGGTGAACATCGCAAAGTTGCAGGGTAACAGCCAAACAGCCACTGCAGAGGTAACAGGGAGCGCGGAGATGGCTCAGTTGGTAAAGCACTTCCATTGTGAGCATGAGGAAGTGGGTGACAATGTCAGGTTTGGAGGTGTACATGAAATCCCAGCACTGGGGAGGTGGAGGTAGGACCACCCCTGGGACTTGCCGATAAGACAAAGGAGGTGGATGGCGTTCTTAGGATGATGCTCAAGGTTGGCCCCTGACCTCCACGTGCATTTGAACTTAGGAGCATATGCATACATGAAGTTGTACGTGTACACATTTAAAAAGTGAACAATTCCACGGTTTGTTGTTTGGGGGACATGAGGTTCCATGGTGGAAATGTGATTTCTCTCTTCTGTGGCTTCTGTGGCTGTTTGCTTATCTGATCCTGTTTGTATTTTTTTTCCCTTCCTCTTTGTGTCCTTGTGTAG
Seq C2 exon
CCCGTAGCTCTTAGTGATCGAGAGGTGATCTCCCGGCTTCGGAACTGTGTAGTCTTGCTGGTAACTCAGAGAATGATGCTGTTCGACACCAGCATCCTGTACTGCTATGAGGCCTCCCTTGCGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039356:ENSMUST00000038474:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGGGAGTTTTAGTCCAGG
R:
CTGATGCGCAAGGGAGGC
Band lengths:
303-1526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types