RnoINT0057248 @ rn6
Intron Retention
Gene
ENSRNOG00000009245 | Exosc2
Description
exosome component 2 [Source:RGD Symbol;Acc:1306573]
Coordinates
chr3:10153489-10154808:-
Coord C1 exon
chr3:10154632-10154808
Coord A exon
chr3:10153618-10154631
Coord C2 exon
chr3:10153489-10153617
Length
1014 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCTTTGTGTCCCTGTATAGCCG
3' ss Score
9.07
Exon sequences
Seq C1 exon
CTAGGTCAGGGGGCTTTAGTCCAGGTCTCTCCTGCCCTGGTGAAAAGACAGAAGACCCATTTCCATGACTTGCCATGCGGTGCCTCAGTGATTCTGGGTAACAATGGTTTCATCTGGATCTACCCGACACCCGAGCACAAGGACGAGGAGGCAGGGGGCTTCATTGCCAACCTGGAG
Seq A exon
GTGAGCGGACATCCTTTGGGCATTTAGCAAGTCAATAGTCTTGTGCCACCTAGGATGCTTTCTAAGAAGTGCAGTGTTAGGCGAGTCTGTCATCGTAGAGCATTATGAGTGAACTCACAAAGGTGTTGCAGCATCTCAGCAGTGGTGACTTTGGAGGACACCTGTCTGCCTGAGCTGCAGATGCCTGCAGTGTGGCTTGTGGTTTGCTCACTGTCTAGTACGCTGCCTGCAGAAACTGCTGTGCTTTGAAAGGTCTGAGCTAGAGGGTATTCATGAACACCTGAGTCTCCTCTTCCCTAAAGAGACAGACTTGGTGGCTTTGAACTTGAGCTTTGCTGGTGAATGTCGCAAAGTTTCAGGGTAACGACCACTGCAGAAGTAACAGGGGACTGTGGGGATGGCTTAGTTGGTAAAGCACTTACATTGTGAGCTGAGGACTTGATTCAAACTCTAGAAACCAGGTGACAACGTCAGGTGTACTGGTGTACATGTAATCCCAGTGCTGGGGAGGTGGGGTGGGAGGACCCCTGAGGCTTGCTGATAAGACCCTGTTTCAGAGGAGGTGGATGGCTTTCTTGGGATGGTACTCGAGGTTGGCCCCTGACTTCCACGTGCATTTGAATTCATGAGCATAAGTATACATGAAGTTGTACATACACACATTTAAAAAGTAAACAATTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCGACTGTTTTTCCCGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATATAATAAAAAAATAAAATATTAAAAAAAAAGTAAACAATTCCACAGTTGGTTGTTTGGGGGACATGGGGTTCCGTGGTGGAAATGTGACTTCTCTCTTCTGTGGCTCCTGGGACTGTTTGCCTATTTGGATCCTGTTTATATTGTTTTTTTTCCTTTCTCTTTGTGTCCCTGTATAG
Seq C2 exon
CCGGTATCCCTTAGTGATCGAGAGGTGATCTCCCGGCTCCGGAACTGTATAGTCTTGCTGGTAACTCAGAGAATGATGCTGTACGACACCAGCATCCTGTACTGCTACGAGGCCTCCCTTGCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009245:ENSRNOT00000012312:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGTCAGGGGGCTTTAGTCC
R:
TGATGTGCAAGGGAGGCCTC
Band lengths:
304-1318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]