GgaINT0124649 @ galGal3
Intron Retention
Gene
ENSGALG00000003887 | Q5ZHN8_CHICK
Description
NA
Coordinates
chr17:6561628-6562128:+
Coord C1 exon
chr17:6561628-6561804
Coord A exon
chr17:6561805-6561999
Coord C2 exon
chr17:6562000-6562128
Length
195 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTTCCTCTGTCCTTCCTCAGCCA
3' ss Score
8.28
Exon sequences
Seq C1 exon
CTTGGCCAGGGTGTGCTTGTTCAGGTCTCTCCCTCCCTTGTGAAACGCCAGAAGACTCACTTCCATGACTTGCCCTGTGGTGCATCTGTGATCCTCGGCAACAACGGTTTTATCTGGATCTACCCAACTCCAGAACAGAAAGATGAAGAAGCAGGGGGCTTTACAACCAACTTAGAG
Seq A exon
GTGAGGGGACAGGGAAGATGATGAGCCGTGTTCTACCAATGATGTTTTCCTAGTTGTGATCCAGAAGGCACGTGAATCACTTCAGACATTCAAGAAGTGGTATTAGATTTGTGGCAAAATGTTTTTTTTTTTTTTTTCTGATAGGCTTGCATTATTTCCCTGTGTATTCATCTCTGTTCCTCTGTCCTTCCTCAG
Seq C2 exon
CCAGTTCCCCTGTCTGACCGGGAGGTGATCTCACGGCTCCGAAACTGCGTTGTAGCTCTGGTTACTCAGAAGTTGATGCTCTTTGACACTAGCATCCTGTACTGCTATGAGGCGTCCCTTCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003887:ENSGALT00000039547:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTGTGAAACGCCAGAAGA
R:
ACGCCTCATAGCAGTACAGGA
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]