DreINT0065407 @ danRer10
Intron Retention
Gene
ENSDARG00000028688 | exosc2
Description
exosome component 2 [Source:ZFIN;Acc:ZDB-GENE-050417-27]
Coordinates
chr5:71357467-71358512:+
Coord C1 exon
chr5:71357467-71357643
Coord A exon
chr5:71357644-71358383
Coord C2 exon
chr5:71358384-71358512
Length
740 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
TTGTGTGTGCGTGCGCGCAGCCT
3' ss Score
7.56
Exon sequences
Seq C1 exon
CTGGGTCAGGGTGTGCTGGTGTATGTGTCTCCGTCGCTGGTGAAGAGGCAGAAGACACACTTCCACAATCTGCCCTGCGGAGCGTCGCTGATCCTGGGGAACAATGGATACGTGTGGCTGAGTCCCACACCGGCACTGCAGGAGGAGCAGGCCGGAGGATTCTACACCAGCATGGAG
Seq A exon
GTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAGAGAGAGAGAGAGAGATTAGCATTGTGTGTGTGGGATTGATTGTGGGAATGGATGTGCGTGTGTGCGCGCGCGCGTGTGTGTGTGTGTGCGCGCGCGTGTGTGTGTGTGTGTGTGTGCGCGCGTGTGTGTGTGTGCATGCATGCATATGCGTGAGTGTATGCATGCATGCTTGTGTAGGTAAGTGGGCGTGTGTGTTTGGGATAGTGTGTGTGTGGGATTAGCATTGTGTGTGTGTGTGTGTGTGTGTTTGGGATAGGGTGTGTGTGTGGGATTGATTGTGGGAATGGATGTGCATGTGTGTGTGTGTGTGCGCGCGCGCGCGCGTGCTTGTGCTTGTGCTTGTGCTTGTGCTTGTGCTTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGCATATACGTGAGTGTATGCATGCATGCATGCATGTGTGGGTAAGTGGGTGTGTGTGTGTTTGGGATAGTGTGTGTGTGAATGATTGGGTGTGTGTGTCTGTACTGGTTTTGGTGGTTTACAGGGACAGAAATGTGTATAATGTTGTGTGTGATCTAAATATAACAACTTGTGCGCGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGCGTGCGCGCAG
Seq C2 exon
CCTGTGTCTCTGTCGGATCGTGAGGTGGTCTCTAGGCTCAGGAACTGTCTCCTGGCTCTGGCCAATCAGAAGGTGCTGCTGTTCGACACCAGTGTGCTGTACTGCTATGAGGCGTCACTGCAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028688:ENSDART00000149195:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGGTGTGCTGGTGTATG
R:
CTGGTGTTGCAGTGACGCC
Band lengths:
302-1042
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]