MmuINT0066453 @ mm10
Intron Retention
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:152228171-152232022:+
Coord C1 exon
chr3:152228171-152228245
Coord A exon
chr3:152228246-152231876
Coord C2 exon
chr3:152231877-152232022
Length
3631 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGC
5' ss Score
6.57
3' ss Seq
AGTTCTCTGTTTTCCTGAAGGTC
3' ss Score
8.05
Exon sequences
Seq C1 exon
GAGATCAGCAGGCTCCAGCTCCAGCTGGACAGGTTGATTATACAAAGGCTTGGGAAGAATACTACAAGAAAATGG
Seq A exon
GTATGCTCTACAGTTTACGTCTTATCCTTTATCTTAGTAACTAAACGGAAGTAAATACACATTACAAAGCTAGAGATGAGTAACAAAACATTTGCTTGTTTTTAAAAAAGAATACTTGAGGTAACTCATCCGTATGTTTTTATAATGTTAAAGTTTATATTAAACAAGCTAGGCAGTGGTGATACCTGCCTTTAATCCCAGTACTTGGAAGGTAGAGGAAGGTAGATCTCCGAGTTTGAGGCCAGCCTTGTCTACAAAGCAAGTTCCAGGACACTTGGGACTCTTAGACAGAGAAACCCCATCTTGAAAAACAAAAATAATAATAAACAGGAAAGGTGACATCCTGAAATTGACTGGAAGTTAAGACATATTAAGAGCAATTCAAGAAATTCTTATAATTGTGCTTATGGCAGAGAAATACAATTGTCAGCAAGTTAATAATTAAAACCTGGCATTTCCTTACTAGGTAATAATATATGGCTTTATTACTGTACTTTTGTGTAGTGGTCTAAATGGAATGAGATTAAATTTTAGGCCAGCAAAGTAGTTGTATCACTGGCTTTACTGCAAAATAAGCATAAAATTAGCCCACAGTGACATTGCTTTACATTTCTAAACATTTGCATGCATTGAAAAGGAAAAAAGGGTGACCTTTTAAAAAGATTTTGACAACTATTGAACGTAATTCTTAACATAACCATAGTGATTGTGTTAATGTATTTCTTGTCGGTGATACAGCTTTCGACAAAGTTCCTTTCAGAACAACTGTTTGGGGAAATGTGATAACAAACTTCTGCAGTGAACAGATGGGCTGATAACTTTTCTTAACCTCACTGATCGCAGGCAGGTTCTAACAGATGGACCTTAGCACTAGAAACTTGAAACCTGCCGGGCGTGGTGGCACACACCTTTAATCCCAGCACTTGGTGGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGACAGCCTGGTCTACAGAGTGAGTTCCATCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTTTGGGGCCTGGGGGGAAGAAACTTGAAACCTTAAAACAATATTGTGTGTAATTAGAATGCTTACATAATTTCTTCTCTGAACTGTGATATTTTTGAGAGTAGATGGAAATGTATTAATCATTCCGTGGTAGCCGTGCTGAAATAGTGCTACTTGTTTATAAGAAGCTGAGCATGCCAAGGTGAAAGTGCGCTAACTCCATTGTTTGTTTTTACTGTGTGAGTGTTGATTGGGTAGAAACCTGGTAACTGGACTACGTAATTAAGACAGAGTAAGGTATTTGTCTGTGCTCGATTATGTCATGTTATTTGTTTACATGACTTCAAATAAGTTTTATAGATATTTTGCATTCTGTATTCTTAAAAAGTATATTGACTAGGACTTTTGAGAGTAGGTATTTTAACTCAATTAGGTTTTAGTTTTTAATATTCTAGCACTTTCCAGCACACAGTTCTGTGAATTCCTCTTCTTCTAATTATTATTATTATTATTAGAGATTTATTTATTTTATGTATATGAATGCACTGTAGCTGTACAGATGGTTGTGAGCCTTCATATGGTTGTTGGAAATTGAATTTTAAGAACTCTGCTCAATCCGACCCAAAGATTTATTTACTGTCATAAATAAGTACACCGTTGCTGACTTCAGACATACCAGAAGAGGGCATCATATCTCACTATGGGTGGTTGTGAGCTACCATGTGGTTGCTAGGATTTGAACTCAGGACCTTGAGAAGAGTAGTACTCTTACTCGCTGAGCCGTCTCCCAGCCCGAATTCCTGTTCTTGGTTGTTATGTCTACCGATCAATCAGTTGGCATACATAGAGACAGACACACACAGACAGCAGCATCGTGCAGGATAACTATTTGGAGACTCATTTTCTTCATTTGTGCTTTTTTGTAATTATGTTGAAGATCTTAATCCTGTGAGCAAAAAAAGACTAACTGAACAATTCCCTGTCATATAGATCTTGAAAGATACTGTTTTAGGTAATTTAATTAATCATTGAATTAGTATTTTTAATTATATGATAGTTATAAAAATCATTTTTCCCTGTAAAACATTTAACTACAATTTTTTTCTGAAAGTATGGTCCTTGATATATTTTTTAGTATAATCATGAATTAAGAGACCTTAAAGCAAAAGGTTCAGAATAGAAGCTCAGGAGATAGATGGGTAAGAGTGCTTAATGACCTGGGTTCAAATCCCACTACCTATCTTAAAAGCCAATCATGACTGTTGCATGTTGGGAAGCAGTTGCAGGAGCTTGCTAGCCAACTGTGGATTCAGTAAAAGGAGCAGGGGAATAAGGTACAGAGGGATAGAAGAAGGCAAAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTGCAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAAAAGAAAAAGAAACTCATTTGCAGTTAACTTGCTTGTTTACAAAATTCATTAAGTATTTCTAGAATTCGATTTTTATCATTTGATAACTCAGAATGGTCACTTAAAACAAAATTACTAATAAACGCTGAGTTTTGGGCTGGTGAGATCGCTCAGTGGGTAAGAGCACCCTACTGCTCGTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACAACCATCTGTAACAAGATCTGACACCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAGCTGAGTTTTACATCTTTCATTGAACTTTATTTCAGCTGCCAGGTTATTTTTAGTAAAGCTGTGATATAAACTCAGTATGTCTTTTGCTTCATTGTGTGTGTCATAAATATCTTTCAGTACTTCTCTGTAGTTTAAGACTAGTAATATAGTGACCCAAATGGATAGAAGAGTGGTGAGCTAGGTATGGTGGCACATATACGCATTTAGTCCTAGTGCTCAGGAGGCAGAAGCAGGTAGATCTCCAAGGATGAGGTCAGCCCTGGATAGTGAGACCCTTTCTCAGTTAGCAAAAAAAAAAAACAAAGCGTTTCTTCTTTCCTTGTCAAAGATTATATCTGAATTTTCCCCTTTGTTTAAAGGTATGTGAGTTTGGGTCATTTTGTCTTTTACTAATCAAGCTGAACTAAGAGACTGAAACTTGTGATTGAAGTGAAAAGAGTATCTTTGCCGTTTCTTGTGTGCTGCACTTTCCCCCCTCATCCTCCCTCCCTTGTCTAAGGCATATTTAAGATAAACAGAAACTGAAGGGGCAATGAGGCACAGATAATCCTAGCACGTGGGAAGTTGCCAAGAGGATAACAAGTTTTGAGCCACCTGTGCTACATAAGTGAAACCCTGTGTTGAGATAAAAACAAGAGCTATTGCCCCTCTGTGCCTTGCATTATAAGCTGTACTTAATGGTACATACATTTTTGTATTAAAGTTGAGGGGGTGTTTTAGGTCACAAGGGCAGACACGAGGTTATTAAAAGGCTTGGAAGAAGTATTAAAAAGGCAAGATGCTGTGTTTACTAGAGAAGAGTTACTGTGAGATTTGTAATTATAGCAGCAATAAAGTTCTCTGTTTTCCTGAAG
Seq C2 exon
GTCAAGCAGTTCCTGCTCCTGCTGGGGCCCCACCAGGTGGTCAGCCGGATTATAGTGCAGCCTGGGCTGAGTACTATAGACAGCAAGCAGCGTATTATGCCCAGACAAGTCCCCAGGGGATGCCGCAGCATCCTCCAGCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034:ENSMUST00000166984:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.646
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(75.9=84.6)
A:
NA
C2:
PF090055=DUF1897=PD(20.7=12.2),PF090055=DUF1897=WD(100=67.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types