MmuINT0085826 @ mm10
Intron Retention
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25909594-25909936:+
Coord C1 exon
chr2:25909594-25909677
Coord A exon
chr2:25909678-25909813
Coord C2 exon
chr2:25909814-25909936
Length
136 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
GAGATTCCCACTCGTTGCAGATG
3' ss Score
7.16
Exon sequences
Seq C1 exon
TCCTTCGTGAAGGACTACATGATCACCATCACCAGGCTGCTCTTGGGCCTTGATACTACACCAGGCTCCGGCTACCTCTGTGCA
Seq A exon
GTAAGTGAGGGGGGTGGGGGTGGGGGGCGGGTGTGTGGTGCCATACGGCACAGCCACCCTCCGTGGCTCACTGTAGCTCTGGGGCTCTGGGTGCTGTTGTAACTCCTCTCAGCTCAGAGATTCCCACTCGTTGCAG
Seq C2 exon
ATGAAGGTAACCGAGGACGACCTGTGGATCCGCACTTACGGCCGCCTCTTCCAGAAACTCTGCTCCTCCAGCGCCGAGATCCCCATCGGCATCTACAGGACCGAGTGCCATGTCTTCTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740:ENSMUST00000037580:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAAGGACTACATGATCACCA
R:
CTCCGAGAAGACATGGCACTC
Band lengths:
202-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types