GgaINT0123777 @ galGal4
Intron Retention
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8217392-8217907:-
Coord C1 exon
chr17:8217824-8217907
Coord A exon
chr17:8217521-8217823
Coord C2 exon
chr17:8217392-8217520
Length
303 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGT
5' ss Score
9
3' ss Seq
CAGTTGCTGTTCATCCCCAGATG
3' ss Score
7.97
Exon sequences
Seq C1 exon
TCATTTGTGAAGGACTACATGATCACCATCACCCGGCTGCTGCTGGGCCTCGACACCACGCCGGGCTCTGGCTACCTCTGTGCG
Seq A exon
GTAGGTGCTGCTACGGGGTGCAGGGCATGTGCATGGGGGCTGCGGGATGTGAGGCTCCTCTGAGCAGAATGGGGCACAGCATTGCTCCCTGTGTCATACGTGGGCAGTGTCAGCACTGCCAAGAGCCCTAATGTTATAAAATCACCGAGTTTGTTAGGTTGGAAAAGACCCTTAAGGTCATCAGGTCCAACCCTTGGCCAACCCTGCTCCCGGTCTGTCTGTGGTGCTGGCCTTGCTCTGGGGTTGGCATCAGTGCATTTGGGCACTGTTCCGATGCTGAAGGCAGTTGCTGTTCATCCCCAG
Seq C2 exon
ATGAAGATCACGGAGGACGACCTGTGGATCCGGACCTACGGGCGCCTCTTCCAGAAGCTCTGCTCCTCCAGCGCTGAGATCCCCATCGGCATTTACCGGACGGAGTCGCACATGTTCGCCACCTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGGACTACATGATCACCA
R:
CTCGGAGGTGGCGAACATG
Band lengths:
208-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]