GgaINT0123777 @ galGal3
Intron Retention
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8912399-8912914:-
Coord C1 exon
chr17:8912831-8912914
Coord A exon
chr17:8912528-8912830
Coord C2 exon
chr17:8912399-8912527
Length
303 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGT
5' ss Score
9
3' ss Seq
CAGTTGCTGTTCATCCCCAGATG
3' ss Score
7.97
Exon sequences
Seq C1 exon
TCATTTGTGAAGGACTACATGATCACCATCACCCGGCTGCTGNTGGGCCTCGACACCACGCCGGGCTCTGGCTACCTCTGTGCG
Seq A exon
GTAGGTGCTGCTACGGGGTGCAGGGCATGTGCATGGGGGCTGCGGGATGTGAGGCTCCTCTGAGCAGAATGGGGCACAGCATTGCTCCCTGTGTCATACGTGGGCAGTGTCAGCACTGCCAAGAGCCCTAATGTTATAAAATCACCGAGTTTGTTAGGTTGGAAAAGACCCTTAAGGTCATCAGGTCCAACCCTTGGCCAACCCTGCTCCCGGTCTGTCTGTGGTGCTGGCCTTGCTCTGGGGTTGGCATCAGTGCATTTGGGCACTGTTCCGATGCTGAAGGCAGTTGCTGTTCATCCCCAG
Seq C2 exon
ATGAAGATCACGGAGGACGACCTGTGGATCCGGACCTACGGGCGCCTCTTCCAGAAGCTCTGCTCCTCCAGCGCTGAGATCCCCATCGGCATTTACCGGACGGAGTCGCACATGTTCGCCACCTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGGACTACATGATCACCA
R:
CTCGGAGGTGGCGAACATG
Band lengths:
208-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]