MmuINT0110555 @ mm9
Intron Retention
Gene
ENSMUSG00000028341 | Nr4a3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:MGI Symbol;Acc:MGI:1352457]
Coordinates
chr4:48083862-48096224:+
Coord C1 exon
chr4:48083862-48084040
Coord A exon
chr4:48084041-48095976
Coord C2 exon
chr4:48095977-48096224
Length
11936 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCTCTCTGTCCTTCTACAGAGC
3' ss Score
11.3
Exon sequences
Seq C1 exon
GTCAAACACTGCTGAAGATAAGTTTGTGTTCTGCAATGGACTTGTCCTGCATCGACTTCAGTGCCTTCGAGGATTTGGGGAGTGGCTCGACTCCATTAAAGACTTTTCTTTAAACTTGCAGAGCCTGAACCTTGATATCCAAGCCTTAGCCTGCCTGTCAGCACTGAGTATGATCACAG
Seq A exon
GTAAGCGTCAGCTGCCGAAAGCCGGCGACCGTGGCCTTCTTTCTCTTACCTGTGACCAGGTAGCTTGCGTGTTTCTGTATAGCTTACCACCAAGTTTCACTACTTTAAGCAAAGAAAGCATGTATCCACAACTTACTCTTATGAGCTTCTAGGAGAAAGGATCCATACTATTGAGTTGATATCAGAGCCCAGTTCCTCTGGAGCCTGTTAGCAGTTGACTTGGCTACTTCAGGGCTGTTTTTACAAAGGATCTCCAAAGATCATCTTAACCAGCCTGCCATTCCTGTGGGCTTCTTTCCAGGTCTTGTGTAGAGACCTAAAGTGCATCAAAGAGCTACAGCCTATGGAAGACAGCATCATTTACTAATCCTGGCTGGGAAAGAATGGAGAAAAATGGGTATTTGTCAAAAAGTGAAAACGACCCAACTCCACAGCCTTTTGAAAAGTTCAAAAACAGAAGTATAAAGTTTGTTCCGTTTCTAGAGTTGAGGAGCTAGCTCAGATAGTAAAATACTTGCCTTGCAAGCCTGGGGGCCCAAATGTGGGGTCCCCAGAACCCACATTTAAAAATGCTAGGTGTGATGGCATGAACTCATGATGCCAACACTGAGGAGGTAGAACAGGATGATCCCTGAGGGCTTACTGGCCAGCCAGCCTCACCTAACTGCTGAGCTCCTGACCCACCGGTGAGAGACTTCATCTCAAGAAGGGTAGATGATATTCCTAAAGAAGATAGCCAAGATGTCCTCTAACGTGCACACACACACACACACACACACACACACACACGCTCAGTTGCTACATTATTCTACTCTCTTGCTACATGTCCCATCACCCTGTACCCTGGGGGTGCTGCTCTAGGCTCCCCTTCACCCTTCATCCTTGCAGTTTCTTGTTAAGTTGGATCTTCATCAGTGGGCCTGGTGAGAAAGTGTCTTGAGGTGCCAGCTCCAGAAGGGGTTAACTGGATCTGAAGGTTCCTCCTCCCTTGGGTCAGACTCAAGCCCAACTTGGCTGATGGGCTGAGAGCCAAATTCAGACAGGCTGCGCCCTTGGCTAGAGGAAATATTCCCCAGATAGGTGATCCTGATCATGTTCGTCAGCAACGCTGGCCTCTCCTTTCTAAAACAGCCTTGCTTTGCAGAAGCCAATGCTTCTCAACCTATAGATCACAAATCCTTTGGGGGGTCAAGTGACCCTTTCACAGGGGTCACCCAAGACCATCTTTACATTAGATATTTACATTGCAATTCATAGCAGTGGCAAAATGACAGTTATGAAGGAGCAATGAAAATAATTTTATGGCTGGAGGTCACCACAACATGAACTGTATTAAAGGATCACAGTGTTTGGAAAGTTGAGAACCACTGGCCTCAGCACCTGCATCTGCTTATGTCAGCTGTGAGCCCAAGTTTGATGTGTCTGTGTGCCCCCAGCGGCCAGGCTAGGCCTGGGCCCGACTCTCCCCTCCTGGTCTTTGGTCCTGGGTGAGAAGCTTGGTTCTCACTAGGGCTGTCGTAGTATTCCAAGGCCGTGAAACAAAAGCAAAGACAGCCTCAGAGGGCATGGATTCCACTGACAGGGCCTTCTGATGTCATAGCAGAACACGTAAAACAAATAGCTGTTTAAGACCCAGGCACTTCACTCTAAAGACTCTAAGGAGACTAGCCCCCAAGGTCATTTTGTCATCTAGCTCTTCAGCTCCACTTCAGACCCATTCAGCATTTCTGGGACAGGTAGACATCCAAAAACTGGAAAGTATAAAGTAGGGCTGAGTTTATTTACAAAAGGCAAACTTGAGAGGGTGGGGCTTTAGCTTTCTTCAACAGTTCCTTGATACAGTTCCTTGCTGTATCACTAGGGGAATAGGAGTTGAATATATAGCCACTGGTCTAGGTGCTGACTCACATGTCACTGGGTTTTCAAAGATGATGACGTGCATGTCTGGAGGACACAGGATGTGTAAATTCATCCACAGGATGCTGAGGGTTGAACAGAATGTGGAGATGCTGGAGAGGGGATCAAGTGTCGAGAGACCACAGACTGGGGAGCAGAGAATGTTCACAGGCCAGTGTGGTGTGGAAAGAATAATAGCTCTAAGCATAAATAAAAATCTCCCAAAGCTATTGGAAATATGACTGACCTAAGTGTCACAAAGGAAATGGCTAAAACATCTAGTGTTGGGAGAAGCCACTAGACCTACAGAAAGAGAGTGTCACGGGTTACAGAACCTTTCCTTAGCCTTCCGCACCCAGTGAGACCCAGGCATGTGGGGTCTGTCTTGAGATCAGTGGAGAGCCACGGAAAGCTTTGAACAGTGGAACGATGGCCAGACTTGCATTCTAGGATGATCTACAGTGGCAGCTGGCTCTGAGCACAAAGTAGGTCAGGGAGAAGCAGAGGAAACAGCGAGTCGTATAGCATAGGGGCTGAGGCTCACAAGGAGAGCCTGGCTCATGAAGCCAGTTCTTGCTTTGTTTTGTGCTATGGAGGTTAATGGACACCAGGGTACCAGGTGTTCCCAACTCATAGGGTCCACATAGCATCCAGAATAGAAATTAAGCGGAAGGTGGTGCTAGTCTCTGCAACCCATTTGTGCTGTGCTGTGATCAGAGCTGACCAACCCACTGCCCACTTGGGTAGAGATTGCTGGAGGAAGAGGCAGTTTGGCATGGCAATTAAAACATGGGTTTCTGGTTCTGGTAACCCCCTTATTAAACTGGAGTCTGGTGTTTCTTTAGCAAGAATTATTGAGTAGCATAGCTGTCTTCTCTGTACTTGTTTCCTCATCCACAACATGGGGATAATAACATCCGTTCCATGGGGTGGCAGTGTAGGTTATGAAAGACTGGGTTTATGACACAGCCAAACTGGACTCATGGAAGACCTTAGATCTCCTTATGCCTTGGATCATATCTCCTTGGAGTGGGATTGACAGAAGCTCCCTCAAGATGGGGTCTGACCTGTCCTTCTCTTTGGAAACCTTGAGCAGTATAAAATCAAACTCAGTGTCTTGAAGAAAAGGTGGTAGCTTTATATGGCAGTAAGAACTCACACCTATAATTCCAGCACACAAGAGACTAAGGCAAGAGGATTGTGGGTTCAAGGCTAGCTTGTCCTACATGGTGAGTTTAAGACCGGCCCGTCTCAAACAAAACAAGGCAGTATAGAATGTTTGGCGACTATTTCCTTAGCCACTTAGGTGACTCAAAGGACAGTGATCACAAAAGAGTGAGGGAGACTGGATGGACCGAATGATTTGTATGTAGGTCTTTCTCAAGGGTAACTCCAGTTGCTACCTTCATTCCTGACAGCCTTTCTAGAGCAAGCTGTCCGAGGTGCTGCAGATACCACACAAGCAGAATTAGCCCTCTAATCCCACAAAACTCTTGGGATTTGGTGACTGGGAAGGATCTGGGATGCATAGGAGCAATGGGCAATAGAGGAAGAGCAGTGCCCAGGAAGCACCCCCACTGTTGTGAGCAGCCACTGTCCGGTGAGTGGGCAGTCCCAAGGTCTTGATGTCTCAGGATGCCTCATAGTCAGAAAGTGGAGCAACAGATGAGCCCTAGGAAAATTCATTCAAAAACCTGTCTTATCTGAAACCAGACAGGCACCTGGGAAAGGGAGGAGGGATCTTAGTCCATTAGCCAGTCTTGCTTTCACAAAAAGCCTTCAGAAATTGGATAGTGGTGGTAGTTTACCCAAACATGATGTCTCTCCCCACCCACCAATTTATTTTCTTCTTCCTCCCCTGAAGTACTGGGTGGTGAGATGGGACAGGAAGTAGTCTCTTTTTGATCAATCTCCCATCCTACAGTAATGGGGAGTTCCCCCACAGTTTGTGGTTTTCACATGTTTTCTGGGTCCCCAGTTCATCTGCCCTAACCATTGCCTCCTGTCAAAGCCACATCCCTGGAGCAATGTGAAGGCTTTGCTTCTTTGACATTGATGGGGTGCAGTGTGTTGTTATCGGCTTGCCACCCTCCAAACAGAAAGTTAGTGCGGTGTTACCTCTTTACAAAGTTTAGGCATTGGGGCCTCTCTAAGCCAGGCTGTCGTTGTGCAGGAATAGGAAGCTGAACTGGGCATGCATCCTAATAACAGGAATTTTGTCATCTACCAAGATATGGTATAAGGAGCTCTATGCATGGTGGTTAGCCTTTAAATTCTTTGGTTTAGTTTGGTTTGGTTTTTGGTTTTCTGAGACAGTGTCTCACTATTTAGCCCTGGCTGTGCCTGAACTCTGTAGATCAGGCTGGCCTGGAACTCACAGATCTGTCTGCCTCTGCCTCCAGAGTTCTAGGTTTAGAGGCAGAAGCCACTATGTCTGGCAATGTTTAGGTTTCTGAAGGGATAGGTTCAGTGAAGAGGAAGTCTGGGTAAACGGTACGTTATGGGGAATTAAGAACACTCAATGTGCTGGTCATGAATAACTTCCTAACGCAGTAGCATTTCGATGAAAAGGTCACTCTAAACCAGGGAAACCAGAGATCCAGGGCATGACCATAAAACAGCCCAGCACAGTTGTGGGGAAATCATGGACAGTCAAAGTGCTTTCTTCATGGATTTAATCATATACATGACCAGAGCGGAAAGAGGAGAGCATTTCAAGGAGTCCAAGCAATGATTCTGAACGACTTCCTGTTCTGAAGCAAACGTGAGAGCAGAGGCAGGAATCTACTCTGGAAGATAGTGTTGCCACCTCCCGGGGCACCAGCTTGCACACAGTCTCTGGGCTCTGGGAAAATGTAAAGGCTTTTCAGTGAAACAACTGACTCATTGGGATATTTGCCTTGTTACTATGAACTATAACCTTGGGGTATAAGCATGAATTTCCTATCCAGTGATCGATAGGGGAATATGTTCTAAAGGGTCCTTTGGAGCCAATAGCAGAAGAAATTTTGATGCCCAAGTGGAGTTTTGTTTTTTGTTTTTTTTTTAATTTCCCAAGGTGTTGTTTTATAGATTCAAGGTAGAACAATGAGTTCTTTCTCTTCTATCTATTTTTCCTGGTCTTCTTGGAACATGACCTCTAAGATGGAAGAAAGGCAGATCTAGGGGCAGTGTGAGATCAGCACTTGGCTGATCCCTCACCCTGTCGCTCCAGAGCATGTCTGCTTGCTTTAAATATCTGGCCATTCTGATTTTTCCATCAAATAGAGCTATCAGCCATGTGGCAAGGGCAAGTATGGATGTGGAGATTAAAGGTCTGAGTTCAGGTCTTCACATGGCCACACTTGGGATATACTTTGGGGGCCCAAACAAAAGTCTAAATCCTGCTGTCTGGTGCATGACCCGTATTCACCGAACACGTGTGTTGTAAATATCAAATATCAGCAAGTCTCTCAAATTAGGAAAATCTAAATAATTTTTAGCCCACCATTGTTATTAGAAAATAGCCTGACTCCCTGAGAGATGCCTAATTTCACTTAGATTAATTCAGTCGGTGTCTGTGGCGCTCTGCCACATGCCAGGCGCAGAGTCCCTTCCCTTTAAGGAGTCCATAGTCTTAGAAAGACAGACAGAAAAGACAGCTTTGTGCACCTCGACCTAACTTGTGGCTCCCTGACCAGTGTGGGTTCTGGGGCTGGCCAGCAGTTGGCAGAGGACACATGGTTCAATAAGTGGCAGCAGTGTGACTTCCTAGAGACAGAGGAGGGGCTCAGAGCAGGAAGTCCTGTTACATGTTTGCTGTCTCCGGAACAGCCCCATTTTTTTTTCTTCCTCCTTGGCTAGAACTGTGTCATCATCTCAAAGTTGGCCAGTGGCCCAAGACCTGCTCAAGAAAGCTGGCTTGGGGGGATGGGCTACTGTTGAATGCTATCCGTCCCTGTCTCTATGCACTGCCTTCTGCTCTGAGGAGGAGATCCTGGGGCTTCTCTTATCAACCAAGAGGCAGAAGTGTGAACTGTGAAATAGCAAACGTTAGCTCAATGTAAGAAACCAGCATCGAACATTGACGTGGGAACAAGCTTCTTTGGGAGAGGGCTCTCATAGGCAGTAAAATAAGATGCCTTGGGAAACGGGGTTTACCGAGATGAGGTGAACATAGGATAGAGATGCTGCCCAGCAGCTTTGAGGGCAAGGACTCCCTAGGGCTGAGCTTCTCCACCCGGCATACAGAGCATTGGACATAGGGTTAAGTTACATATGCTAGTTGTGTGGGCCTGGAGCAGGGCCTACGGTTGTGCGTTTCTCAGAGGTTCCTGGGCTTTGTTGACTCCTCTGGGATGCGAGCCACTCTTGAGGAACAACGGAACCTATTGTCAATTAGGACTCTTTAACATTAATGATAGCTAATATTTTTTTAGACCGTACCTGGCACTATGCCAAGAGTTTCACATATGTGGTTTTAGTGTTGCTTAATAAATCTGGAAGTACCTGGGATGGATCACAGCAAGGAAGCCAGTCAAAAGCAATTAAAACAACGCAGGCAGCAGATATTAGAGATCTTGTCCAGAGGAAATTCTCATTGAGAAAACACAGATGCAAGGAACACCACACAGAGAGTAACTAAAGATTCTGGAATAGGACCCCAGGGAAGGAATCCCCAGAGGTTATTATGAGTTTGGGAGAAGGGAGATTTCTGTACCATTAGCAGATGAACTCAGAGCCATGGCTGGCACGAAAGGTAATGAATGGAGTTTTAAAAACAGCGTATTTGCAAGTATTTATTAAGTGTCTACTATATTCCAAGTACCTGACATTATTCCAAGTACTTGCTATGTAAAGATCATTTCATTCTCAGAGCAAGACAAAAAGCAACTGGCATTTTTAGCCCTCTTTCACAAGTGTGGAAACGCCCCAAAGTCACCCAGCTCACAACTGACAGAGCTGAGAGGCACGAAGAGGGGGGCTTCTGCCTGGGAAGTCTGGGAGTTTGGAAAGTTCTTTAGTACCGGAGCTTCTTAAGGGCTCCCAGCTCATTCTTTTCATTTGAGCAACTTTCACGCTGAGTATCACTTAGTCATTTCCTAAATGACTTGGATCTTCCAACTTACAGATTCATCTACCTGATGTGTATTCAGCACCGTTGGTGTGCTAGGTTTGGTGCAGGACATGGGAGCACAGAAAGCAAATACAGGACACTTCTCCCGGGGAGCTTAAACCCAAGGAGAGAGGCAGGCGATTGTCACGTGAGGATCAGATTTCAAACTTGCTTGTCCTGCAAAGGGAGACCCTGTACTAGAAGAGAATCTGACCTAGACAGGAGCCAAGGAGGAAACTTCCTTGACAGAATATTGGATCTGAGAGGAGTAGATCTTAACTGGCCGAGGGGGAAGTACATGAGCAGTGCTTTGAGTGTCTCATTATTCCACTCTGTCAATCCCATCCACTCCCTCTACTCCCCTCTTCTCTACACCACTCCTCTTCCTCCTTCCTCTCCTCCTGCCTTCTCCTCTTTCCCTCTGACTCCCTCCTGCCCTCTTCACACTCAGCACAGCCTTCTGTGACATGGATATCTAATATGCTAATAGGAATCCAAACATGTCTTTAGATGCGAACTGCCCCACACAGTAGATTGAGCTGTTTCCTTCACTGCTCTGACCCCACTGGCTACAGTACTGTTTGCCCCAGAGTAGGTACTTAATAAACATCTATTGGAAGAAGTAATTAACCACTAGTTAATTAGGTCCACAGAAAATAGGAGGTTGCTGAAGGAAGGCCAGTTTATCTCAGGATAAGGAGAAACTTTCTAACAGTTAGAGGCAGTTGAAGGCAGGTAGTCAGCTGGTGGTGAGAGAAATTCTCAGATTCGGTTTGAAAGAAACTGGCCGCTTGCTAACCTCAGCCCTAGGCAAGTCACTTAACTCTGAGTCTTCTTACATATTAATTAGAGAAAACATTTGCCTTGCCTCATTCTGAGCTAAAATAATCTTAGTAAAAGAGTATAACCTAAAGGCTATTAAAGGAATTCTATTCGCAGGTTAAAATGTCTGACCTGCCAGGGTAGGTGGAACCTGATTCTGGGGTTTGTAATGCCGTAAGTGCAGATTCTTCTCTTAGGTGGGAGTTTAAACAAAGCAGATAAAATCTCTTCTCATGTACATGCACAGTGTTTTTGATGTATGTCTAGTACTTAGCCACGACTCTAAGAGTTCTGTCTTGACATCTTGGAAACATAACCCTGAAATGCAGGATTGTATAAACCCAGTGTATAAAGCTCGTTTGGTTAAATCATTGGAGGGGGTGACAACAATTTTTTTGGTTGCTGTTGCTGACGAGGATTCAACCCAGGGCGTGTGTGCTAAGCGAGCACTCCACCACTAAGCTACACCCCTCCTGCCCAGAGAAATGTTAATCCTCCATGTATAAATCTCTGTGAAATGAGAAAATATCTGACTCCCTCTCTCCCTCTGTATTATGGACTCCACACTTCAGCTCTGTAGCTGTTTGCTAATCTGCAAGGGGTGGGGGAAGTTCCCTTTAACTAAATGTCAGTGATTAGAATTTTAAGGAATTTTAAATTGCTGAGAAGGTCCCAGACAGTTGGTGACTCCCTGGTGAACTGAAAACCTTGCTGGCTGCTGGCAGGAGTATACACAGAGGCTGAATTTTATCTTAGCTCCTATGGAAAACTAAAGAAGCCACAGCTCCTGTGAGTGTTCACAACAACAAAGACAGGATGAGGTGTCTTTGGCTCCTAACAGGAGTGTCTATGAATTCCTCAAGGAATTCCAGGCCCGGTAGATCCAGCTGGCAGGAGGTATCGATCTCCACTTCAATTCACTGAATAAATAATGGTTGCCATAGTTATTGAGCAGCCGCCACTGGCTGGAGAGCAGAGAAAACTCCATGCTCCCTTCTGTGAGTTTGGCCAAGAGAAAGTCTAGCTCTAAGGTTCCACAATCAATTGACAGCCCCGCCCCCAACCACCACATCACACCCGACAAATTGCTCAGTTTCTTCATCCTGATAATGAGCATGGAATCTTGGATGTTCTGTGAGACAGGAGGCCCTGGAAGGATGGAAGGACCTCAGTTAATGGACTGGCATTTGATTGTGAGAGACACCTCCTCTTCCCAGCTTGTAAATCAGATTTAATGTGTCTCAATGCTAATAGAATTAAATATCGGCAAGTTGGTGTTTGGTTGTGTTGTCCATATGACAGGATTTTATGAAGGGCCATCTCTTATCTTGTACTGTTTTAACAGTATTCTCCAAATAGCACTAACCCAGACATTTTAAGAGAAAGGTAAAAGAGCCATTCAGTTATTTCACAAATATTTTCATCCTTTTTGTGAAGAAAATAAAATACACTTCTTTATAGTATGTGTATGTGTGCGTTTGTACACATTCCACAGTGCAATTCTGGAGGTCAAAGAGGACAGACAGCATGGGGGAATCCATTTTTCTTCTTCTTCTTCCGTGTAGAGACCAGGGACTAAACTCAGATCATCAGGCCAGGCAGCAAATACCCTTACCTGAACAGTCATCTCACCAGCCATAGATTTGTATTATTATTTTTGCATAGACGAGATAATAGCCTGGGAGCTGTTTAAAACTCTCTTCTTCATTTAATGTTACTGGTATTTTTCCATATTGTTTAATACTCTTCATACTTATCTCTGATAGCTTCAGGATCTTCCACTGTCTTGGCTTGCTGTTATTCATTGAACAGTACCCCATTTTTTCAACTTTGCCCCTCTTCCCAGTGCTTGCTTTGTTTGAGTTCTTGTGTGTGAGGTGGTAACAGATAAATGTTGTACCCAATGTTTCCATACATATGGGGTTGCTGTTTTTGTTTTCTTGACTTTCTTCTTTGGATAAATTCCCAGGAATTGTGGTAGCTTGGTCAGAGGCTATGGACATTTTTATACCTCTTGAGTTTACTGCCAAACTTGCCACCTGGTTCTGTGCTTTGGGGAGAACACTATAAACTTTCGGCAGCTCACCACTGCAAGCAGGATTCCCTCTCAGCCTTCAGCACGGGGGCTCTGCATTTAGCAAACCAAGTGGGGAGGTCTGAACCTGGCTAACCAGCTTATAGTTTCCTAGTGCAAGCAAAGGGAAGAGCTGCAAGGCTTGGGGACACTGAGGCTCTGTTTCTGTTTAGTCTTGCAGCTGCCTCCTGGTCACCAAGTGTCAGCCACTGTCTCAGGTGCTGACTCTCCTGGTGGGTGGTGCTCTACAGTTGGTATAGGTAATATCATCTCAGTTTGAGGACATTTACCTAAAAATCACACTTTTCTGACAATTCACTGTCCGATGTTTAAGTTGAACAAGAAGAATAGGACTAAGACTTGTGTGTTCCCTCCCTCGTAGGAAGACATTGAGTATTGTAGAGACTGGGTCCCAGGCAGAGAGCAGAGCCAGAATTGGATTCAATTCCAAACCCGGGGTTTCTTTCTCTATAAAACACTTCATTACACCAGAAACCTGCAAGCCATAATTCACCGAGATACTGGGGGCAGTGATGGACTTAAATACATCTTAACTCTGGAAGGGTCGTTAGGAGCCCTTAAATCCAGCCTCCTCTCTTAAGGCCCTCGTGAAGAAAGCACTTATCCCAAGTCATATCCACTGACCACACTGTGAGAATGCAGGTATCCTGCTTTTCAGGCCCTTTTTATTTGGGACAAGAAAGAAAATTGTATTGGTAGTTGTTTTCTTTAGCTTTTGCTTCAGAGAAATGACTTTTCTTTTTTTTTTTTAAAAAAAAAACATTTCTAGCACCTTTTTTAAAAAAAATTTATTTATTTTTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTCGTTATGGATGGTTGTGAGCCACCATGTGGTTGTCGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCGGGTGCTCTTACCTGTTGAGCCATCTCACCAGCCCCAAGAAATGACTTTTCTAACAAGACCTATGACTAAAACAACTAAATCTAGGAGAGGTTAGAAGTTAAGGCTAGATCACTGTTTAGAAAGATATCTTCTACCCCTCAAAAAGTGGAGTTTTATATAAGGATCAGATTGAGGAAGACACCAAGATCAATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACGAGCACACATGAGCACACGAGCACATACACACACATGAATAAATATGGGTTTTAGATATAAATCTAACAATAGAAGAAAATTAGGAATAAAGGATACCCCAGTCTTCCCTTAGAAAAGAGGTTCTACTTTACAGCAGCTGTAAAAGTCTCTTGTATGGGATGTCAGGCTCCTGTGTCATAGCAAGACCCAACATTGTTTTCTAGCCAGAGAACAATTCTTCCTAGAAGATGGGCTTCAAATGCCAGCTTTCTGCAACTGTATGATGGGAACCCTTTTCTGTATAGTTTTGTGGAATTAAGAGATACTCTCCATGTCTTAATAAATGCCTGCCCCATGTCCTCCCAGGCCTCTCTCTCTCTCTCTGCTGTGACTTTTCCTTCTCTGCCTGAGAGGACTTGTGTGTTTTGTAGAGTTCAAGGCATAGGTCAAAACACAGGAAGGAGAGGTGGCCTTTCTTGGCACTGGCTAGCATGGAGCCATGGGAACGCACTTAGGACCAGGAGCTAAGAGGCTCACATCAGTGATTTCCACCCCAGTTTGGGACAGAAACATTAATTCACTTTCCTGTATCAAGCCAAGTGGGCAAGGCTAGCTATCCAGCACTGGATTCTCCTGCTTCTGCCTCCCCATAGCTAGAATTACAAACATGTGCCACCATATCTGGTGGGTTCTGGGGAATTAAAAGCAGGCCCTGACTGAGTTTCTAACTGAGCTATCACTCCAGTCCACAAAGGCCCATCCGGCTGTAAAATGCCTAAACCTGGCTGACGGAAAAGGAGAGAGACCTTAATTAGGACATCTAGTGCCTTTGACCTGCTCCCAAACTTACCAACTTCTCTCTGTCCTTCTACAG
Seq C2 exon
AGCGACATGGGTTAAAAGAACCAAAGAGAGTGGAGGAGCTATGCACCAAGATCACAAGCAGCTTAAAGGACCACCAGAGGAAGGGACAGGCTCTGGAGCCCTCGGAGCCTAAGGTCCTGCGCGCGCTGGTAGAACTGAGAAAGATCTGTACCCAGGGCCTCCAGCGCATCTTCTACCTGAAGCTAGAGGACTTGGTACCTCCACCTTCTGTCATCGACAAGCTCTTCCTTGACACCCTGCCTTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028341-Nr4a3:NM_015743:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(31.9=100)
A:
NA
C2:
PF0010425=Hormone_recep=PD(34.6=78.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: