RnoINT0103004 @ rn6
Intron Retention
Gene
ENSRNOG00000005964 | Nr4a3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:RGD Symbol;Acc:61882]
Coordinates
chr5:63807453-63821637:+
Coord C1 exon
chr5:63807453-63807631
Coord A exon
chr5:63807632-63819587
Coord C2 exon
chr5:63819588-63821637
Length
11956 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCTCTCTGTCCTTCTACAGAGC
3' ss Score
11.3
Exon sequences
Seq C1 exon
GTCAAACACTGCTGAAGATAAGTTTGTGTTCTGCAATGGACTTGTCCTGCACCGACTTCAGTGCCTTCGCGGATTTGGGGAGTGGCTCGACTCCATTAAAGACTTTTCTTTAAATTTGCAGAGCCTGAACCTTGATATCCAAGCCTTAGCCTGCCTGTCAGCACTGAGTATGATCACAG
Seq A exon
GTAAGCTCCAGTTGCTGCCGAGAGCCAGCGACCGTGGCCCCCTTTCTTGTATCTGTGCCCAGGCAGCTTCTGTACTTCTTTATAGCTAACCACCAAGTTTGACTACTTTAAGCAAAGAAAGCCTGTATCCACAACTTACCCTTACGGACTAATAGGAGAGAGGATTAGTACTACTGAGTTATTATCAGACCCGATTCCTCAGGAGCCTGCTGGCAGCTGATCTGACTCCCTCAAGGCTGTTTTTACAGAAGGTCTCCAGAAAGATCATCTTAACCAGCCTGCCACTCCTATGGGCTCCTTCCCAGTTCTTGCGTAGAGACTTAAAATACATCAAAGAGCTACAGCATATGGGAAGACAACATCATTCACTGATCCTGAATGGGAGAGAATCGGGAAAAATGGGTATTTGTCAAAAAGCAAAAACGACTCCACGTTTTTTTTTAAAAAGTTCAAAAGCAGAAGTATGAAATGTGTTCCATTCCTAGAGCTGAGGAGATAGGTCAAGTACTAAAATGCTTGCCTTGCAAGCCCGAGGGCCCGAATTCAATCCCTAGAACACGAACTAATGATCCCACACTGAGGAGGTGACAGGATGGTCCCCGAGGGCTGACTGGCCAGCCAGCCTCACCTAACTGGTGAGCTTGGACCAGTGACAGACTTTGTCTCCAGAAGGGTAGGTGGCATTCCTAAAGAAGATACCCAAGGACGTCCTCTGTCGTACACACAGTCACACACACACACACACACACACACACACACACACACACAGTCACACACACACACAGTCACACACACACACAGTCACACACACACAGTCACACAGACACACACACACATACATACACACACACACACACACACACACACACACACACACACACCATGAAAATACATGCACATAAAATGCTCAGTTTCTACATTACTCTCTCCTCACATATCCCATCATCCCCTAGAGATGCTGCTATGGGTCCCCCTTCACCCCTCATCCTTGCAGTTTCTTATTAAGTTGCATCTTCATCGGTGGTCATCAGTGGACCTGGGGAGAAAGTGACTTGAGGCACAAGCTCCAGAAGGGGTTAACTGGATCTGCAGATTCCTCCTCCCTTGGGTCAGACCCAAACCCAACTGGGCTGACTGGCTGAGAGTCAAGTTCAAACTGGATATGCTCTTAGCTAGAGGAAATATTTCCCAGGTAGGCGATACTGATTATGTTCCTCAGCAAAGCCGGCCTCCGCTTTCTAAAACAGCCTTGCTTTGCTGAAGCCAGTGGCTCCCAACCTGTAGGCCACAAACCCGCTGGGGGTCAAATGACCCTTTCACAGGGGTCGCCTAACACCATCTTCATATTAGACGTTTACATTATAATCCATAACAGTAGTAAAATTACAGTTAGGGAGGAGCAATGAAAATAATTTTATGTCTGGGGATCGCCACAGCATGAGCTGTAGTAAAGGGTTGGTCGCAGTGTCATGAAGGTTGAGAACCACTGGTCTTAGCGCTGTTTACATGCATCTGCCTACGTCATCTGTGAGCCAAAGTTAGATGTGTCTGTGTGCCCCCAGATGCCAGGCTAGTCGTGTGCGTGACTCTCTCCTCCTGGTCTTTGGTCCTGGAGAAGCTCAGTTCTTACTAGGGCTGCTGTAGTATTCCAAGACTGTGAAACAAAAGCAAAGACAGCTTCCGAGGTTATGGATTACACCGATAGGGCCTTCTGACGTCATAGCAAAACATAAAGCCAATTGGTGTTTAAGACCCAAGCGCTTCACTCCAAAGACTGATGAGACTCTAATGTTATCTAGCTCCATTTCAGACCCATTCAGCATTTCTGGGACAGTTAGACATCCAAAAACTGGGAAGTATAGAACAGGATTGAATTTATTTACAAAAAACAAAAAAAAAATTTTTTTTTGAGTGGGCTTTAGCCTTCTACAGCTAAAACCAGTTCGTTGCCATATCACTATGGGAATAGGAATTGAATATATATATTCGCTGGTCCAGGTGCTGTCTCACATGTCACTGGGTTTTCAAAGACGATGACAGGCTTACCTGGAGGAGACAGGATGTGTAAATTAATCCACAGGATGCAGAGGGTTGAACAGAATGTGGAGATGCTCGAGAGGGGATCAGGTGTCAAGAGACCACAGGTTAGGGGGCAGAGAGTGTTTGCAGGCCGCTGTAGAAAAAATAATAACTCTAAGCATAAATAAAAATCTCCTGAAGCTATTGGAAAGATGACTGGCCAAAGGGTCACAAAGGAAATGGCTAAAAAAGTCTAGTGATGGGAGAAGCCACTAGACCTACAGAAAGAGTGTTGAAGAACATAGAACCTTTCCTCGGCCTTCCGCACCCAGTGAGGCAGGTGGGGGTCTGTCTTGAGGTCAGTGGAGGGAGAGCCACAGAGAGCTTTGAACGGAGGAATGAGATGGCCAGATTTACATTCTAGAATGATCTAGGGTGGCAACTGGCTCTGAGCACGAAGTAGGTCAGGAAGGAGAGGAGGAAGCAGCAAGTCGTGAAGCACAGGGGCCGTGGCTCACAAGGAAGGCCTGGCTTACGAGGCCGGTTCTTGTTTTTGCGTTGCTCTGTGGAAATTAACAGACACCAGGGTACCACGTGCTCCCAATCTAAAGAGACCACATAGCACCCAGGTAGAACATAAGCGGTGCTAGTCTCTGCATCCCACTTGTGCTGGGTTGTGATCAGAGCTGACCTATCCACTGCCCACTCAGGCAGAGATTGCTGGAGGAAGAGGCAGTTTGGCATGGCAGGGAGAACATGTGTTTCTGGTTACGGTAACCTCCCTATTAATCTGGAGTCTGGTGCTTCCTTAGCAAGGACTACTGAGTCTTACATTTGTCTCCTCTGCACTTCTATTTACTCATCCACAAAATGGGAACAATAACTTCCATTCCATGGGGTGGCAGTGTAGGTTACAAAAGATTAGGCTGATGATGCAGCCAAATTGGACTCTTGGCAGACATTAGACCTCCTTATGCCTCTCCTTGGAGCGGCACTGGCAGAAGCTCCCTCAAGTTGGGGTCTGACCTGTGGAAACCTTGAGCGGTGCGAAAGCGAACTCAGTGTCATGGAGAAAAGTTGGTAGCCTTCTATGGCAGTAAGAACTGAGCCTGATGACTCAACACCGACAATTCCAGCATGCGGGAGACTAAGGCAAGAAGATCGTGAGTTCGAGGTTAGCTAGTCTTACCTGGTGAGTTCCAGACCAGCCTGTCTCAAACAAAACAAGGCAGTACAGTATGCTTGGCGACTATTTCCTTAGACACTTGGGAGACGCAAAGGATCACAAAACGGCGAGGGAGCTTCGATGGGCTGAATGATTTGTATGGAGGTCTTTCTCACAGGGCAGTTCCAGTTCCTGCCTTCATTCCTGCCTGCTTTTATAGAACAAACTGTCAGAGGTGCTGCCTGTGTCACACAAGCAGAATTAGCCCTCTAATCTCACAAGACTCTTGGGATTTGGTAGCTGGGAGGAGGGATCTGGGAAGCGTGAGACCATTGGAGAACAGAAGAAGAAACATGCCTAGGAAACACTCCCACTGCTCTGAGTACCCACTGTCAGTGAGGTAGGCAGTGCCAAAAGTCTTCCTGAAGTCTCAGGATGCCTCATAGTCGGAAAGAGGGGTTGTGGAGCATCAGATGAGCCCTGGGGAAATTCATTCAAGAACCTGTCTGTTCTGAAACCAGAGAGGAACGTGTGCAAGGGAGAAGGGATTTTAGCCCACTAGCCAGTCTGGCTTCCTCAAGATGCCTTCAGAAATTGGATAGTGGTGGTAGTTTACCCAAATATGATGTCTCCCCCTAGTTTATTTTTCTTCTTCCTCCCCTGAAGTGCTGGGTGGTGAGAATGGGCCAGGAAGTCGTTTCTTTTTGATCTCTCTCCCACGCTACAGTAACAGGGAGTTCCCCCACAGTTTGTGGTTTTCACATGTTTTCTGGGTCTCCGGTTCATCTGCCCTAACCATTGCCTTCTGCCAAAGCCACATCCCTGGAGCAAGGTGAAGGCTTTGCTTCTCTGACATTGATGGGGCGCAGTGTGCTGTGATAGGCTTGCAATCCTCCAAACGGAAAGTTAGTGCGGAGTTACCACTTTACCAGGTCCAGGCCCTGGGGCCTCTCCGGGCCAGGCTGCCAGTGGGAAGGAATGGGAAGATGAGCCTCCCATACGTCCCGATGACAGGAATCTTGTCGTTTACCAAGGGGCTCTGCCTGGTGGTTAGAGTTTAGGTCCTTTTGTCTTAGTTTGGTTTGGTTTTTGGTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGAGACAGCTGTGCCGGAACTCACTCTGTAGATCGGACTGGCTTAGAACTTACAGAGATCTGTCTGCCTCTGCCTCCAGAGTTATAGGTTTAAAGGCAGGAGCCTTATGTCTGGCAACATCTAGGTTCTTAAAGGGATAGACTCAGTGATGAGGAAGTCTGGGTAATTGCTATGTTATGGCGAATTAAGAACACTCAACGTACCGGTCATGAGTAACTTCCCAAAGCAGTAGCGTTTAGATGAAAAGGTCATTCTAAACCAGGGAAGCCAGAGGTCCAGGGCATGATCATAAAACACTCCAGCACAGTTGTGGGGGAATCATGATGGTCAAATTACTTTCTTCGTGTTATTTAATCACATACATGACCAGAGCAGCAAGAGGGAGAACATTTCAGAGCGTCCAGGCTCTGATTCTGAATGACTTCCTGTTCTGAAGGAAGCACGAGAGCAGAGACAGGAGTCCACTCTGGAAGAGCGTGTCACTCGCCTCCAGAGGCACCAGCTTGCGAGTAGTCTCTGGGCTGTGGGGAAATGGAAAGTTTTTTTCAATGAAACAACTGATTCATTGGGATATTTACCTTGTGGCCTCATACTATGAACTAACCTTGGAATATAAGCATGTATTTTCTATCTAGTGGTTGATAGGGAAATATGATCTAAAGGGTCCTTTGGAGCCAGATAGCAGAAGAAATTTTGATGCCTAAATGGAGGTTTTCTTTTTTAATTCCCCAAGGTGTTCTTTTCCAGATTCAAGTCTTCTGTCAGGTAGAACAATGAGTTCTTTCTCTTCTATCTATTTTTCCTGGTCTTATTGGAACGTGGCCTCTAGTAAGGAGGAGGAGGAAAGACAGACCTAGGGACAGCGGTGAGACCAACACTTGGCTGGTCCCTCTACCTGTCTTTCCAGAGCTCTTCTGCTCGCTTTGAATATCTATCTGGTCATTCTGACTTTTGCATCAAATACAACTGTCAACAATGTAGCAAAGGCAAGTATGGGCAAGATTTGGCGGAATGATATAGTTTGGAAAAGAAGGGGGACAGTTTCAGGATTTGGAGATTAAAAGTCTGAGTTTATTTGGCCACACTTGGGATACATTTTGGGCTCAAAAACAAGTCTAAGGGCAGGGGGAAATCCTACTAGTCTTTAGATTTACCTGTCTGGTGCATGATGGTATTAATTGAACAGATGTGTTGTAAATATCAGCAAATCTCTCAAATCAGGAAAATCTAAATTATTTTTAGCCCACCATTGTTATTAGAAAATAGCCTGAAAGATGCCCAATTTCAACTTAGATTCATTCAGTTGGTGTCTGGGAGCTCTGCCACATGCCGGGCAAATAGTCCCTTCCCCTTAAGGAGTCCATGGTCTTGGAGAGACATACAGAAAAGAGAGCTTTGTGCACCTTGACCTGAACCCCCTGACCAGTGGGGGTTCTGGGGCTGCCCAGCACTTGGCAGAGGACACATGGTTCAACAAGCAGCAGCAGTGTAACTTCCTAGAGAGAGAGAGGAGGGGCTCAGAGCAGGAAGTCCTGTTAGATGTTTGCTGTCTCTGGAACAGGCCCCATTTCTTTTCTTCCTCCTTGGCTAGAACTGTGTCATCATCTCAAAGTTGGCCAGTGTCCCAAGACCTGCTCAAAAAGCCGGCTTGGGGGGATGGGCTACTGCTGAATACTATTCATCCCTGTCTATCCACAGCTCTCTGCTCTGAGGAGGAGGTCCTGATCCTTCTCTTATCGACCAAGAGGCAGAAGGGTGCCCTGTAAAACAGCAGAAGTTAGCTCAGCGTAGGAAGCGAACGTGAGACTGTTTGAAGTGGGAATAAAGCTTCTTTGGAAGAGCGTTCTTGTAGGCAGTGCCCTGTGGAAATAAAATAAGATGCCTTGGGAGACGAGGTTTACAGAGATGCAGTGAACCCAGGGCAGAGAAGTTGCCCAGCAGCTTTGAGGGCAAGGACTCACCAGGGCTGAGCTTCTCCACCTGGCATGGACATATTGTTGAGTTGCACGTGCTAGTTGTGTGGGCCTGGAGTAGGGCCTAAGGTTCTGCATTTCTTGCGGGCTCCTAGGCTTTGTTGACGCTGCTGGGACGAGAGCCATGTTTGTGACGAACAAGGGAACCTGTGGCTAATTGGGATTCTTTGGCATTAATAATAGCTAATATTTTTAAGACCGTACCTGGCACTGTGCCAAGAGTTTTACATGTGTGGCTTTAGCATGGCTTTACACGTTTGAAAGTACCTGAGACGGATCACAGCAAGGAAGCCAGTCAAAAGCAATTAAAACAACATAGGCAGCAGATATTAGAGATCTTGTCCAGAGGAAATCGTCATTGAGAAAACACAGATGCAAGGAACACCACGCAGAGACTCTCTAAAGTTTCTGGGAGGGAACCCCAGGGAAGGAATCCCCAGAAGTTATTATGAGTTTGGGGGAAGGGAGATTTCTGTGCCATTAGCAGAGGAATTCAGAGCTATGGCTGACACGGAAGATAATAAGTTTTTAAAACAGAGAATTTGCAAGTATTTATTAAGTGTCTACTATATCCCAAGTGCCTGACATTATTCCAAGTACTTGGCATGTAAAGATCATTTCATTCCTCACGGCGGGAGGCAACTGGCATTTTTAAGCCCTCTTTCACAAGTGTGGAAATGGACCCAAAGTCACCCAGCTAATAACTGACAAAGCTGAGGGGTACGAAGAGGGGAGCTTCTGCCTGGGAGGTCTGGGATTTTATAAAGTTCTTTACTATTGTGAGCTTCTTGACAGCTCCCAGTTCACTCTTTTAATCTGAGCAACTCCCACGCTTAGTGTTCAGTTAATCATTTCTTAAATGACTTTGGCCTTCCGACTTACAGATTCGTCTATCGGATGGGTATTAGGTGTCATCGGTGTGCTAGGTTTGGTGTAGGAGATGGGACCGTGGTAAGCAAATATAGGACACTTCTCCAGGAGGCTCAAACCTAAGGAAAGAGGCAGGCAATTGTCACATGAGTATCAGATTTCAAACTTGCATGTCCTGCAAAGGGAGATCCTGTACTTGAAGAGAATCTGACCTAGACAAGGAGCCAAGAAGGAAGTTCTCTTGACAGAATATTGGATCTGAGATGAGTAGGTCTTAACTGGCTGAGGGGGAAGTACACAGGCATAGACCTGAGTGCCTTATTATTTCACTCACTCAATCCCACCCGCCCCCTCTCCTCCCCTCTTCTCTCCACCTCTCCTCTTCCTTCTTCCTCTCCTCCTGCCCCCTTCCCTTTCCCTCCAACTCCCTCCTGCCCTCCTTATGCTCAGCAGAGTCTTCTGTGGCATGGGTATCTAATATGCTAATATGCTAATATGCTAATATGCTAATATGCTAATAGGAATCCAAACTTGTCTTTAGATTCGAACTGCCCCGTACCATAGAGTGAGCTGTTCTCTTCACTGCTCTGACCGCGCCATCTACAGTACTGTTTGCCCCAGAGTAGATAACTTAATAAACATGTAGCAGAAGAAGTAATTAACTACTAGTTAATCAGGTACACAGAAAGTAGGAAGGCCAGTTCATCTCAGGATGAGGAGAAACTTTCTAACAGAGGCAGTCAGAGGCTGGTAGTCAGCCAGTAGTAAGAGAAGATTCTCAAATTTGGTTTGAAAGAAACCAAAAGTCACTTAACTCTTCGAGTCTTCTTACTTATTAATTAAAGAAAACATTTGTCTTGCCTCGTTCTGAGCTAAAATAACCTAAGTAAGAGTATCCCATTAAAGGCTATTAAATGAGTTCCACCAGCAGGTTAAAATGTCTGACCTGCCAGGCCCGGTGGAACCAGGCTTTGGGTTTGTAGTGCCTTAAGTGGGCATTCTTCTCTTAGGTGGGGATTTTAGCAAAGCAGATCGAATCCCTTCCGATGTACACGCACAGTGTTTGTGATGTGTGTCTATACTGAGCCATGACCGTGAGAGTTCTGTTTTGACATCTTGAAAACATAATTCTTGAGCTAAGATACTGGATGTGGGATTGTATAAAGATCGCATAAACCTAATGCAAAAAGCTCATTCGGTTACATCACTGGAGGGGGTGACAACAATTTTTTGGTTGTTGTTGCTACTGAGGATTCAACCCAGGGCATCACACATGCTAGGTGGGCACTCTACCACTAAGTTACACCCCTCCCGCACGGAAAAAAAATATAATTTCGATGTATAAATCTCTATGAAATGAGAGCATATCTGACTCCCTCTCTCCCTCTGTATTATGACTCTTCATTTCGGCTCGCTCCGTAGCTGTTTGCCAGTCTGCAAGGGGTTGGGGGGAAGTTCCCTTCAACTGAATGTCAGTGGTTAGAATTTTAAGGAATTTTAAATTGCAGGGAAGGCCCCAGACAGTTGGTGGCTCCCTGGTGAACTGAAAACCTTGCCGTCTGCTGGCAGGAGTATACACAGAGACTGAATTTTTATCTTAGCTCCTATGGAAAACTAAAGAAGCCACAGACCCTGTGAGTGTTCACAACAACAAAGGCAGGGTGAGGTGCCTTTGGCTCCTAACAGGAGTATCTATGAATTCCTCAAGGAATTCCAGGCCTGGTTGATCCAGCTGGCAGGAGGTATCGATCTCCACTTCAATTCACTGAATAAGTAATGGTTGCCATAGTTATTGAGCAGCCGCCACTGGCTGGAGAGCAGAGAAAACTCCATGCTCCCTTCTGTGAGTTTGGCCAAGAGAAAGTCTAGCTCTAAGGTCCCACAATCAATCGACGACCCCCACGTCCCCCCACCCACCACATCACACCTGACAAATTGCTCAGTTTCTTCATCCTGATAACGAGGGTGGAATCTTGGATGTCGTGTGGGCCAGGAGGCCCTGGAAGGATGGAAAGACCGCACTCAGTTAATGGACTGGCATTTGATTGTGAGAGACACCTCCTCGCCCCAGCTTGTAAATCAGATTTACTGTATCTCAACGCTAATAGAATTAAATATCGGCAAGTTAGTGCTCGGCCGTATGGTACATGGGGCAGGACTTCATGAAGACCCATCTCCCATCTTGTTCTAACAGTATTCTCCAAATAGCACTAACCCAGACATTTTAAAAGAAAGGTAAAAGAGCCATCTAGTTATCTCACAAATAGGTTCATCCTTTTTGTGAAGAAAAGAAAATACACTTCTTTATAGTGTGCATGTGTGTGCATTTTTGCATGGTCCACAGTGCAATTCTGGAGGTCAAAGAAGGCAGCATGGGGGAGCCCATTCTTCTTTTTCTACCATGCAGAGATCAGGGACTAAACTCAGATCATCATGCTGGGCAGCAAACACCCTTATTTGCTAAGCCATCTCACCAGCCACAGATTTTTATTATTATTTTTGCATCAATGAGATCGTAGCCTGGGCGCTATTTAAAAACTCTCTTCTTCCTCTAATGTTACCAGTTTGTTCAATAATCTTCATACTTATCTCCGATAGCTTCAGGATCTTCCGCTGTATGGGCATGCTGTGATTTACTGAACAGCCCCCCTGTTCTTCAACAGCACCCCTCTTCCCGGTGCTTGCTTCGTTTGGGTTCTTGGGTGTGGGATGGTAACAGATAAATGCTGTGCCGTGTTTCCATACATGCAGGGCCATTGCTTTTGTTTACTTTGACTTTCTTCTTTGGATATACTCCCAGGAATTGTGGTAGGTTGGTCAGAGGCTATGGGCGTTTTTATACCTCTTGAATTGACTGCCGAACTTGCCACCTGGTTCTGTGCTTTGGGGAGAACAACTTAAACTTTTCAGCAGCTCGCCACTGCAAGCAGGGTTCCTCAAGGTTCACCCGATGTGTTTCTTTTGAGCCTGCAGCAGCAGGGCTCTGCGTTTAGTAAGGGTAAACCAAGTGGGGAGGTGTGCACCTGGCTAAGCAAAGTGAGAGCTGCAAAGCTTGAGGCTCGGGTTTCCATTTAGTCTTGCAGCTGCCTCCCATTCACCAAGTGTCAGCCACTGTCTCAGGTGCTGACTATTCCGGTGTGTGGCGCGCTATGGTTGGTATAGGTAATATCATCTTAGTTGGAGGACATTTATAGGATGATCCCACTTTTCAGGTCCTTCGCTGTCCAACATTTAAGATGAACAAGAAGAATAGGACGAAGACCTGTGCATCCCATGCTCCTAGGAAGACATTGAGTCTTCTAGAGATTGAGTCCCAGGCAAAGGACAGAGCCAGAATTAGATTCACTTCTAAACCCTGGGCTTCTTCCTCTATAAAACAGTTCATCTTACCAGAAACCTGAAAGTCATAATTCACTGAGACACCGGGGGCAGTTTCCATTGATGTACTTAAGTACATCTTAACCCAACAGCTCTGGAAGGGGCATTAGGAGTCCTCAAATTCAGCCTCCTCTCTTAATAAGGCCTTAGTGAGGAAAGCTCTTACCCCAAGTCATATCCACGACCCACACTGAGAACGTAGGCTTCCTGCTCTGCAGGGGGAAAAAATGTCCTGGTAGGTTTTTTTTTTTTTTCTTTAGCTTTTGCTTCAGGGAAATAACTTTTCTAACAAGACCTATGACTAGAACGACTAAATCAAAGAGAGGTTAGAAGCTAATGCTTGTTCGCTGTTAGAAAGATACCTTCCACCCTTTAAAAAGTGGAGTTTTATATAAGGACCGGATTGGGGGAGACACCAAGGTCAATGTCCGAAAATACACACATACATATACATATGCACACGCATGTTCAAAAACGAGTAAACATGGTTTTTAGTTATAAATATACCAATAGAAGAAAACTAGGAATAGAGGAGACCCCACTCTTCCCTTAGAAATGAGGTTCTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAGAAAAGAAAAGAAATGAGGTTCTACTTTACACTGTCAAACTTGCCTGTATGGGATGTCAGGCCGCTGTGTCATAGTGAGACCCAACAGTGTTTTCTAGCCAGAGAACAAACTCTTCCTGGAAGACTGGCTTCAAATGCCAGCTTTCTGCAACTGTGTGACTGAGAACATCACCAGCCTTACCAAAAAGATCCAATTGGCTAACATGGGGACCCTTTTCTGTATAGTTTTGTGGAATTAAGAGGTACTCTCCATGTCTTGATAAATGCGTGTCTTTCCAGGCCTCCCTCTCTCGGATGTGACTTTTCCTTCTCTGCCTTAGGAGGACCTGTGTGTTTCTGTAGAGTTCCAGGTGCAGGTCAATGGGTGTTCTGAGGGAACACTGGAAGGAAAGGTGCTTTTCTAGATGGTGGCCAGCACAGAAGCATAGGAACTCACTTAGGATCAAGCGCTAAGGGGCTCCCATCAGTGGCTCCCTCCCTAGTTTGTGACTGAAACATTAATTCACTTTTCTGCACCAAGTCATGCAGGCAAGACTGGCTGTTACGATGTGGCTACATCTGCTGGGATCTGGGGACAAAAGCAGGTCCAGACCGAGTTACTAACAGAACTATCACCCTGGTCCACAAAGGGCCATCCAGTTGTAAAATGTCTAACCCATCCCACAGAAAAGGAGAGAGACCTTAATTAGGATGTCTAGTGCCTTTGATCTGCCCCCATGCTTATCAACTTCTCTCTGTCCTTCTACAG
Seq C2 exon
AGCGACATGGGTTAAAAGAACCAAAGAGAGTGGAGGAGCTATGCAACAAGATCACAAGCAGCTTAAAGGACCACCAGAGGAAGGGACAGGCTCTGGAGCCCTCAGAGCCCAAGGTCCTGCGCGCACTGGTGGAACTGAGGAAGATCTGCACCCAGGGCCTCCAGCGCATCTTCTACCTGAAGCTGGAGGACTTGGTGTCCCCACCTTCTGTCATCGACAAGCTCTTCCTTGATACCCTGCCTTTCTGAGCAGGGGAAGCCTGAGCAGAGAGCTACTTGCTCTGCTGGCACTGGTCATTAAGTGAGCAAAAGGATGGGTTTGAACACCTGCCCCTCTATCCTTCCTCCAGGGGAAAAAGCAGCTCCCATAGAAAGCAAAGACTTTTTTTTTTTTCCTGGCACCTTTCCTTACAACCTAAAGCCAGAAACCTTGCAGAGTATTGTGTTGGGGTTGTGTTTTATATTTAGGCTTTGGTGGGTGGGCTGGGAGGGGGTAAAATAGTTCATGAGGCTTTTCTAAGAAATTGCTGACGAAGCACTTTTGGATGATGCTATCCCAGCAGTGGGGTGGGGAGAAAGGATAATATAACTGTTTTAAAAACTCTTTCCGGGGGAATATGACTATGGTTGCTTTGTATTTAAAAATAAGAACAGCCAAGGGCTGTTTACCAGGGTAGGGCTGTGTCTTAAGACTGATCCCTTTAGTATGTACTTCCCGGATCGAGGCACATAAGTGGTGCAAATGAGGCGGGGAAATTCTTCATTTCTTCATTTCTTTCTTCTTCTTAAAATAAAATGGCAAAAAAAAAAAGATGGAAGATTATCTACAAATCAGACTTAGCAAAATGATAATGGCTATTCGCTTCCACATACAAGTGCAATTTTTTAGAGTGCTGTCTTACTAAGTCTTGTTTGTGAACTCTCCCTCATTTTATATGAAAATAAGAAGGAGGCAGTCATGTTATCAAACGGCGTGCTCATTTTCCTAGCTCACCCTTGGTCCACCTGCCCTGTAGAACCCTTCGGAGGTATGGCCCTTCTAAGACTTTCAGGCCACTCTTGATGGAATTCGACACCCCTCCCCCCAACCCATGACTATCCAGATGTCCTGAAGGGGGATCAGGTTATAAAATGGATTGCATATGACTGTGTTCGCTGTGTGTTTGTCAACCTGGACAGAGTTCTCTAAACCTTCTTTAGTTGTAGCAAGTTCCTGATTCCTCCATTCAGAAGCCCAAGGAGCATTGGGTGACTCGATCAAGGGTTAACCCTAGGAGAACATGCAAATAAGTAGGAACTGGGTCAGACAGGGTAAGCACCAGAGATGATAAGGATTTATATATAAATATATATAAAATTAATTTTTGTTATTGGTTATAGACAATTTTGGAAAGCAAGAGAATCATCTCTTTTTTTTTTTAAAGAGGAAAAGATAGTATTGATGTATTAGCAAAGATTAGTGGGTTACGGTTCAACATTCCGTGTTTGTGCCCCCTTTTCTATGTTTCTACTGTTGATGGCATATTATTATGAAATGATTCGTTGCATAGTGTCCTTATTTGTATGAACATTTGTATGCACGTTCTATTGTAATCGCTTTGCCTGTATTTATTGCAAGACCACCAGCTCCTGGAGGCTGAGTTACAGAATAATCAAATGGGGTGTTCGTGGTGACTTGGATACACCGGTTAGAAATTAAATAAGCATATATATATATAAAAACATAGCAGGTTACATATATATTTATAATGTGTCTTTTTATTAACCATTTGTACAATAAATGTCACTTCCCACGCAGTTATTTTATCCTTTGTTTGCAGTGACCTTTAAGGCAGCACTGTTTAGCACTTTGATATGAAATTTTTGCTTATGTTTTGCTAAATTCAAATAACGTTTGAAGATTTTTAGGTCTAAAAGTCTTTATATTATATACTCTGTATCAAGTCAAGATACCTTTGGCCGTTTTGCTAAGACTCAAACTTTGAATGTCAAACCAATGTCACGGTAGCTTCTGTTAGCTTTTAATCATTTTTGCTTTAGTCTTTTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005964:ENSRNOT00000008302:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(31.9=100)
A:
NA
C2:
PF0010425=Hormone_recep=PD(34.6=78.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]