MmuINT0159261 @ mm10
Intron Retention
Gene
ENSMUSG00000032411 | Tfdp2
Description
transcription factor Dp 2 [Source:MGI Symbol;Acc:MGI:107167]
Coordinates
chr9:96310522-96317582:+
Coord C1 exon
chr9:96310522-96310688
Coord A exon
chr9:96310689-96317476
Coord C2 exon
chr9:96317477-96317582
Length
6788 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTGTTTGTTTGGTCTTGCAGATA
3' ss Score
11.04
Exon sequences
Seq C1 exon
ATTTGAATACCTTTTTAATTTTGATAACACCTTTGAGATCCACGACGACATAGAGGTACTGAAGCGGATGGGAATGTCCTTTGGTCTGGAGTCAGGCAAATGCTCTCTGGAGGATCTGAAAATCGCAAAATCCCTGGTTCCAAAAGCTTTAGAAGGCTATATTACAG
Seq A exon
GTATGCTAGCCACACTAACAGATCCCTGACTGAACCTCTCACTCACTTGTTAAATCTTCACACAGAATGCAGCAATTTAGAGACTCAGGACTGGCTTCACCAGGGGCATCCTTTAGTACTTTTTATAGTTAAGTTTGTTACTTGAAAAATGGAACCCACATCTAAACATAAGGTTTATGTATCGTTATATACAGCTGTACCCAGGGGACCCAGGCTAGTTTAATATAACCTATGCTTTGACTGTGGCCTGTCACATGAGCTCCAATTTTACACTTTTGGCATTATGTCAGTGCTTAGAAATTTTCAGATTTTGGAACATTTCAGATTTGAAATTTCTCAATTTGTACCAATTCCTTCCACTTTATAGATGTACCACAGTTTCATCCATTCATCAGTTGGTACACATTAGGTTCTTTAGGATTTTGGGCTATTTTGAATGATACTACTTTTAAACATTTTTATGGGCTGATGAGATGGCTCAGCCAGTAAGAGCACTGACTGCTTTTACCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGACTCACAACCACCTGTAATAAGATCTGACACCCTCTTCTGGTGTGTCTGAAGTCAGCTATAGTGTACCTATATATAATAATAAATAACTCTTTTAAAAATTTTTATAAGCATTTTGTTTTATAAACATATTTTTGGCTTTGTTGGAGTAAAACTTGGATTTTTTTTTAAGTGCCAAATGGTTATTACAATGACTATACCATTGTACAATCCTCCTAAGCAATGTATGAGGCTTCTGGGTTTTGGTTTTTTTTTAAACATCCTTCTCACTATCCTCCCCACCCCAGTTTGGTACTAGTGATTGACTGCATGGCTCTGCATGATAAAGATACAACCTACCACCAAGTTCCTTCCAGCCCTGTTTGTCCTTATAGTTTCACACTCTGGACATGAAGTGGTAAATCATGGTGATTTTTATTTAATTTCTCTAATAATTCAAGGCCGATTTTCCTAATTCTAACATTTATTTTGCAAAGGAACTTGAACATTTCATCTAAAACTTCACATCACATTTTTTGGTGGTTGTTGCTGTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTTAGATATTTTCTTTATTTACATTTCAAGTGTTCTCCCCTTTCCTGGTTTCACCTCTGAAAACCCCCTATCCCATCCCCCCTCCCCCTGCTCCTATGAGGGTGTTCCCCAACCCACTCCCCCTTCCCCCCACCCACTCTCCCTTCCCCAGCCTGGCATTCCCCTACACTGGAGCATCAAGCCTTCACAGGACCAAGGGCCTCTCTTCTCATTGATGTCTGACAAGGCCATCCTCTGCTACATATGCAACTGGGGCCGTGGGTTCCTCCAGCTCTTTGGTTGGTGATTTCATCCCTGGGAGCTCAGGAGAGTCTGCTTGGTTGATATTGTTGTTCCTTCTATGGGACTGTAAACCCCTTCAGCTCCTTCAGACCTTTCTCTAACCCCTCCATTGGGAACCCCGTGCTCGGTCCAGTGTTGGCTGTGAACATCTGCCTTTGTATTTATCAGGCTCTGGCAGAGCCTCCCAGGGAACAGCTATATCAGGCTCCTGTCAGCAAACACTTGTTGGCATCCACAATAGTATCTGGGTTTGGTGACTGTATATAGGATGGATCCCCAGATGGGGCAGTCTATGGATGGCCTTTCCTTTAGTCTCTGCTTCAGACTTTATCTCTGTATCTCCTCCCATGGTTATTTGTTCCCCCTTCTAAGAAGGACTGAAGCATCCACACTTTGGTCTTCCTTCTTCTTGAGCTTCCTGTGGTCTATGAATTGTATCTTGGGTATTCCAAGCTTTTAGGCTAATATCCACTTATCAGTGAGTACATACCATGAATGTTCTTTTGTGACTGGGTTACCTCACTCAGGATGATATCTTCTAGTTCCATCCATTTGCCTAAAAATTTCATGAAGTCATTGTTTTTAATAGCTGACTAGTACTCCATTGTGTAAATGAACCACATTTTCTGTATCCATTTCTCTGTTGAAGGTCATCTGAGTTCTTTCCAGCTTCTGGATATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTGTTATATGTTGGAGCATCTTTTGGGTATATGCCTAGGAGTGGTATTGTTGGGTCCTCAGATAGTACTATGTCCAGTTTTCTGAGGAACCTCCAGACTGATTTCCACAGTGGTTGTACCAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCTTTCTCCACATCCTCGCCAGCATCTACTGTCACCTGAGTTTTTGATCTTAGCCATTCTGACTAGTGTGAGATGGGATCTCAGAGTCGTTTTGATTTGCATTTCCCTGATAACTAAGGAAAGATGTTGAACATCTCTTTAGGTGCTTCTCAGCCATTTGGTATTCCTCAGTTGAGAACTCTTTGATTCGCTCTTTGACTAACCCATCTTTCAATAGGGTTGTTTGTTTCTCTGAAGTCTAACTTTTTGAGTTCTTTGTATATATTGGATATTAACCCTTTGTCGGATGTAGGGTTGGTAAAGATCTTTTCCCAATCTACTGGTTGCCATTTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTAATCTTAGAGAATAAGCCATGGTGTTCTGTTTAGGAAAATTTCCCCTGTGCCCACGTGCTCAAGGCTCTGTCCTACTTTCTCACTTCTGTAAGTTTCAGTGTATGGTTTATGTGGAGCTCCTTGATCCACTTGGACTTGAGCTTTGTACAAAGAGATAAAAGTGAGTCGATTCGCATTCTTCTACACGCTGACCTCCAGTTGAACCAGAACCATTTGTTGAAAATGCTGTCTTTTTTCCATTAAATGGTTTTAGCTCCTCTGTCAAAGATCAAGTGGCTATAAGTGTGTGGGTTCATTTCTGGGTCTTCAGTTCTGTCCCATTGATCTACCTACCTGTCCCTGTACCAATACCATGCAGTTTTTAATCACTATTGCTCAGTACTACAGCTTGAGGTCAGGGATGGTAATTCCCCCAGAAGGTTTGACTGTTGTCCAGGCTGGAGTTGAACTCTTGTGACCCTGTTGCCTAGGCTTTCAGAGTAGCTGAGACCAAGGTGCACATCACTGTACATCTCTTCAACAGAGCTCTAATATTAGGTAAGGTCTATAAAATCGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAAACAGAGAAACCCTGTCTTGAAAAACCAATAAAAAAAGGTCTATAAAATCAAATGTAAGCAAAAAGGTAGTTTGTCTGTTTGCTCACTGAGTTTATTGGCTGAGATTTATGTTGTATTTCATGTGTTAAGTTAGTACCACGTACCGTCTGCAAGCGTGACCCCTCTTCCCTCCTGCATTCAGCTGGTCTGTGTCCCACTTACGCACTGGTCCCTGCTCCCTTTGCTCCCAGGCACAGATCTTGCTGTTTTCATTATAGCCTCACTGAACTGGAAGCCTAGCAGTATCTGAATGAAAAAGGCTTACTCAACAAACTACCAGAACGTTATTTTCACTGGTGAAGGCTCGCAGCGATTAGTAGGCTCTGTGGTTTGATCTCCTCATGACCTCATCTGCAGACTGAACTGCAGATTTTCTTGTCAGTTCAAAGGGACACGCAGCTTTAGTATGGAGAGGGAGGGAGGGAATGACCCGTGGACAGGAGTGTGAGAACCACCAGGCACAGCCCAGAATAATGGGAAAGAAATGGAGGCTTCCCAAGTCCATTGTAGAAAGGAAAGATAATCTGTAATGTTCACAACGGAATAGCTGTAACCCAGCAGAAAGTTGGCACAGGGCTGGGTACTAATTCCAACTCAGCACAGGAATTCACCATTAATTTCAACATCTTGTTCAGACTTGCTCTTCTTAAATGTATTCATAATCTGCTATCCTTCTTAGAATTGAAGTCTTTTATTTTTTTCACAGCTGCCTCAGCCTGTGGAGAAAAAGGCTCACAAGGCTGGTGTAAAATTCATGTAGCCATTCATTCAGTTCCTCATTGCTGTGTGGGAACGGTCTATCAACTGACCAGACAGGGTCCTAACCTTACCACATAGCTCCATTGGTTTCTGCACAGTAAAACAGTTTCTGTATTACAAAAGTAGTGTAATACAGAGGCTGGGGCGTGGCCCAGTGGGTATGGACACTGGCTGCACAGCCTGACCTGAGTTTCATCCGCAGAACCCACATAAAAGCCATATGGGTGGTATGCCTCTTCTCTCTCAGAGCTCCTGCAGGGAGATGAGGAGGTAGAAGCAGAACTGGCCAATAGCTCTCAGAGCCTCAGAGCCACTAGCCTGGAGAATGCAGTGCAGCAGCAGGAACCGGGAGACCCTGCTTCAACAAGCTTGAAGGCCGGAACCAACTCCAGAGCCCACTAACTTCCACAAGCACACTTTGGTATGGCTTGACATACCCACACTCACACAGACACACAGAGACACACATGCCCACACTCACATAGACACACAGATATACACACATACACACACACACACACACACACACACACACAGAGCTCAAGGGCTGGCAAGATAGTTTGGTGGGTTTGTGATTGCATCAGACCTGATGATCTGAGTTTGACCCCCAGTACCTACATCTATGAAGGAAAGAGCCAGCCACTTAAAGTTATCCTTGGACTTCACACTCATGCACAGCCACACACATACACAGAAATGAAAGTAATATAATATACGAGTGTAAGTTTAAAAGTACAATAAAAGCTTATTTAAGCAAAGTATATTTTCTGGGTATGCATTAGATTTTGCCATATGAGAATCTTTTTATTTTTATTTTACTTTTTGGTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGTCTATCCTGGAACTAACTCTGTAAATTAGGCTGACCTCAAACTCAGAGATGTGCCTGCCTCTGCCTCTGAAGTGCTGAGATTAAAGGTGTGTGCCACCATGCCCTGCAATGTGAGATCTTTTTTATGGCTGTGTTTCTAAAGTTTTTACTTTTTATTAAAGGCCACTGTTAAAAGAGACTATAGGCAAAGGTCCTGGGCTCAAATCCCAGCAACCACCTGGTAGCTCACAACCGTCCATAATGAGATATAATGAGATCTGATGCTCTCTTCTGGGGTGTCTGAAGACAGCTATAGTATACTTACATATAATCAGTAAATCTTTTTTAAAGAGAGAGAGAGAGACTATAAATATTCATTAATTCTGAGGTCCCTAGACATTCAGGTCCAGTTTTCTTTGAGCTAATATTCTGTATAGGGAGAACCACTCAAGTAACAGTATAGTAAGAATTGATCTGTTGTTAGGAAAAAGGAGATGGCCAGGTCATACTCTCGTGGTTTCCTGTAATGTCTGTCTCACCTTTAAAGCCATGAATGCAGACCTGGAGAGAGGGCTCAGTTGTTAAGAGCATGCAGTGCTCTTCCAGAGAACCCAGGTTCCGTTCCCAGCACCCACTTAGTGGCTCACTACCACCTCTAACTTGAGTTCCAGGGAATCTAATGCCTTCTTTTGGCCTCCATGGGTACCAGAAATGAAACTGTTATACAGATACACATGCAGACAAAACACTCGTACACATACAATAAAATAAAAATAAATTTAAAAAATGATCGCATTATTTTTTAAAAATCCCTCATTAAAAGCATGGCCTTTTAAAAACTAAGGACTGTTTTGAATGATAAAGCACATGGCACCACGCAGGGAACTAGTTAGGAAAAAGCATAGATCATTGATGAGCAGTGGTATTGAGTTCACCTGCATACGCTTAAAAGCAGTACCCCAGGGAGGGAAGCTGGTTCAGTTGGTAATATCCAGTGCTAGGGAGACAGACGGCAGGACCCTTGGGGCTGGCTGGTCTGCTGGCCTAGCCTAATTATTAATTAGCAAGCCCTAAGTCTCAGTGAGCAACCCTATCTCAGGAACATATCTACTTGTGCGCACGCTCGCACACACACCATACATGCACTCAAAGTGAGAGGCAAGGGAAGGGGTGCCGGGTGTGAACATCTGCCTGACCCATAAGATGTGCATTCTTTTTAAAGATGGTTCTGACTTACGCAATCCTGACTATTAATATCACAGTCGTGGGGTTTCACGATGAGGACATCAGATGTCCAAGACAGTTCACATTCTTACCACTATACCCCGTAAGCTACCTTACCAGGTCTTACATGAAGAAAGCTAGAGAGACGACCAAGTAGTTAAGAGTATACACTGTCCTTTCAGTCCAGATCCTATTGGACAGATCACAATTCCCATATCCAGGGGAATCCACACCTCTTCCATGGGTACCTACTTTCTTATCCATTCACCCGAAACTCAGGGCTTCACACATGATTTCAGAAAATGTCTTGGAAAAAAAAAGCATTGAAGGAAAGGGGAGTAGTCAAGGTGTTACTTTGAATTCTTTCTCTCTGGAGTCTGCCTTTCTATAGTTTTTTGGGTTTTTTTTCCTCATTCTTGTTCAAAATTTTATTGTGCCTGCCCTGCCTCCCAAATAACCAATGAAGAACACTAATTTCTTCACGGGGCAGGATAATTGTCCAGCTGTCACCAAGACATAAAACCCAGTTTACTTCAGACCACAGCAGAACAGTCACAAGAGTTTGCTATAGTGTTTGTTTGTTTGGTCTTGCAG
Seq C2 exon
ATATCTCCACAGGACCTTCTTGGTTAAATCAGGGACTACTTTTGAACTCTACCCAATCAGTTTCAAATTTAGACCCGACCACCGGTGCCACTGTACCCCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032411:ENSMUST00000165120:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.343
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.9=100)
A:
NA
C2:
PF087815=DP=PD(4.9=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types