GgaINT0034485 @ galGal4
Intron Retention
Gene
ENSGALG00000025759 | TFDP2
Description
transcription factor Dp-2 [Source:RefSeq peptide;Acc:NP_001171642]
Coordinates
chr9:9826632-9831663:-
Coord C1 exon
chr9:9831497-9831663
Coord A exon
chr9:9826732-9831496
Coord C2 exon
chr9:9826632-9826731
Length
4765 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GCAGCTGTACTTTCTTCTAGATA
3' ss Score
6.87
Exon sequences
Seq C1 exon
ATTTGAATACCTCTTCAATTTCGATAATGCTTTTGAGATTCATGATGACAGTGAGGTGCTGAAAAGAATGGGAATGTCCTTTGGGCTTGAGGAAGGCAAATGCTCAGCTGAAGACCTAAGAACTGCAAAATCTCTGGTGCCAAAAGCTTTAGAAGGCTACATCACTG
Seq A exon
GTAAGTTAACTGTCACTTTTAAATATTGTTCCTTGTCAAAATCATAACGTTAGCTAACCAAAACAAGTTTAGTGATGTTAACCTACGTAGGTATGTTACATTTAAAGTTAAGTGAAAACCAGTAGGGCTGGTGACAAACTTTCAAGGGATCTGCCATAATAAGAAATTATTTCTTAAGTAACTAAAGTGACAGTAAGAACAGCTTTTATTCATTTTGAATGACTGCATATGTGTGGAAGAGCAAACTGACTCAGCTGCATTCACAATTGGAGGTGGTTGGGCTCTAAGACTTATCCGTATCTCTGTCCATGTAGGATGTGCTCAGTGTTGTGTGCGTGCTCTTAAGTACATGGACTGTGGGTTCTCCTGCTCTGGTTATTATCTTGGCCAGTCATTTTTATACTCCCATTTACAATGGGAAGCTGTGATACTCAGACAAAAAGTGGCCAGCACGTGCCATCTAAGAACTGAGCATCTGTAAGTAAAGCAAAAGATTCCAAAGAGGAATCCATGTTAGGTCCTTAAAATATGTGATGTCAAAGAATTGCTGAAAATAAATCAGAATTCAGTTGCATTCACTGAAAGCAATATGTTTTACGTGGCTTAACATTTCAAACTACTACCAATGTGCTTATATTAAAATCAAAACATGCTTGTTTTTCCTGCTCCACTCGTTCTGTATATTTTAAAATTCAGAATTCATCTTTTAATTTCATTCACTCTTGGAATTACACACCTGTCTGATACTGCACCAGTGCCAAAAAAAAGTCCCCAAGGAACAAAGTAACAATCCTTTCAGCTTGATGCAGCCAAGTATTATTTATCACAAATTACCAATACCAAAACAGAAAAGGAACGGAACCACATCTTCTAATATCGCTGAAGTCTTTTGGTTTTCTTAATTGAACCCCTTGTACTGAAGAGCAAAATAATTTTCTATTTAATTTTAATCCTGCATTCATGCATATTCAGAGAATAGGATTTCTTCAAATTTGAAAGAGTTGTTTGTTACCCTCTTTTCTGTGTAAAACCAGCTTTTAAAAATAAAAAAACCGCACATATCTAAATCAGTGATTAGTAAGGCATATTAACTTGTTTTGAAAAAAACATCAGCCACACCAATGTACGGCTGGTGTGACTTGTACTGAAAGCATTGCAGGCAGACAAGCACAGCGTTCCCATACAAGGAAGAAACAAGATGTACTCTGTTCCCATAAATAAATAAATAAATAAATAAAATAAACAGCTCAAACATACATAAGATTGCATACTGCAAGAATGCTGTGATTAGGGTTGTTTCACCAGTAGCAGAGCAGTAGCCAGAAACCTGTCTTGAGTTTTAATAGGAAACCTATTGATCTATGCTTTTACTTGAAATGCATTGAGGCAGATACTGTGTTCTTTAGACATGGGTTAAATGTAGCTGCTTCAGCCTCTGAAATAACGTGTTATTAGAATAAGTACATTCACAGACGTATTCTATTTCTATTTTTGTATTCTGTTTGCAACTTAATTACACGACACAAATCTAGAGTTAATGGTACAGATTCAGTTTATATAGTAGAAGTTTCTAATTTTGCTGACAAATAAGGGAAAGATTTAAAAGTTTTGCACAATACCTGAAAATCCGATTTGCCTGATTACATATCTCAGTTCAGTATAACCTCCCATTTTAACCTGGGCAGTTTTCAGGCATTGTTTCTTCCACTATAGGAGCAGTGGAACAAGAGGGTAATTACTGTTTTCTGGAATTCATGGTTTACTTCCAAAGCTCTCATTGACAGCCCATTAAGTACACAGACTACAAATACAACTATACTAGAAAAGCAAATCAAAAGCATGTCTCTTATTTGTTCACTGAATAAATTTGTTACAGTCAAGATTCAAGTTTTCCTAGAGTAGCTGCCTTCATGAAAGCAGTCCTGTTCTAATATGTCTAAAAGCAGTAGCTTCTTGCCTTCTAGTTGCATTCAACATCCAGATAATTTGCATGGAAACTGCTGAACTGTTACCATATGCATCAAAATCTGAGGTTTTTTTTTTTTTTTCCAGAAGGATTATGTATTTTAGCCATTCTGTAAGTGGCTTCACTTGCTAAAAAGTAATGCTTCTTATCTTTTTCTACTGGTTTCATGATGTTTCCCCAAAAACACCGTGTGTGTATATATATATATATATATATGCATACATACACATATACATACATATGTACACACACACATATATACACACACACGTGTGTATATACATACACACACTACACACTTTATTTTTAAGAACTACAATAGTGTGATCCTCAAGTGTCTTGACTGCCATTAAAATAAACAGAAGCTGAGACATATTAACATCATGTAGAAAGAGAATCCATACACCTTAAGCTGTGTTTTTAACACATTTTTCTATTGCTCTATTCTTTGCTAACAGTGCATACTTCTAAAGCTGACAGGACCACCTTAACATTTATTTATTTTTCCCCCCCAAAAGGGAACAAAAGTAAAAGTTAAAATGGCAGCATTGCTTTAGCTAAGCAAGTAATCCAGGGAAAGCAATGGACAGATAACAGGATGCACTACAACCACTTGCCAGCTTCTTATTACGGAAAGAGAAACATTATCTTTGATACTCTACACTTCCACCAGCTTTAAGATAGCATCCCAGGGTCTTACACCTGAAAAGTTCTTATTTGGCAGAGGAATTTCTGGCTATGTAGCACATAGAACTAACCAAGGGCTTAGACCAGAACAATCTAAGTGTAAAGGAGGGAGTGAGAATCTAGTGGAAGGACAGAAACATGTCACGGACTGAGATAAGCATAAACTCTTGTATAACTGTATCCAAATCCTGTGTATTTTAAGCCATACCGATTCTACAGCTGTTAACGCAAAACCAGAGGCCTGCCTTTGTCAGCTGAGTCCTCACTTCTAGAAATGAGACTACAGAGGAAAAAAAAAGGAATTAAAAATTCTAAGGCATTAATAGTTGTGGTAACAGCATCCCACTTGTGTGTTGCCACTAAGGCAGCAGACCAAGCGGTGTCATTTAGGTCCTCTATACTAAGACACGTCTTTATTCTCCCCTGCATAAAGTGCTTTGCAGTCTACATAAATTACAAGCCTGGATCAGAGAACAAGCTGGAGATGGAATGAAAGATGTGAATACTGATGAATGAATAAGCTTGTTCAACTACCAGCAATAATCTTCTGCAACACTATCTACGTCTGCATTAACTGCTAAAGGCTAGTGAAGGTACTCCTTTGGAGCCTTCTCATGTCATATAGAAGTTTCTACCAAATGCATCTGCAGCAAGTACATGCCTGGTTCATAGTAAAGAAGCCACTCTTAGATGAAACTGCATCATCTTGGAAAGGTTCTTCAAACTGATCTCCCTGATTCATACGTGCAGCTACTCTACCAGATGTAGTAAGACTTGTAATCACAGACAGACTTCTATTTTGGCAGTCCCTTCCAGACAGGGAATGGCTTCTTACACTCTCCATCCTGCACAGACTTTTTATTTTCCCTGTCTCCTCTGAGCCCAACTGGAAATCAGCATTTAGGAACACTAGGCAATGAAAGTACAGGGCAAGGATATGCATCCTTGAAACTTTTCTGCCATATGCATTACATCCATGCCGTCTTCCATCCTGCTCTTCAAAAAGAAGGCAGCAATTATCCCAAAATGCTAATTAAACACAAAATAACTAGCACTGACTTGCTACTCTTCTGGAATATTAAGCATGTAGACACAGGTACACCCTTGCAAAAGACCAGGGGAAAAAAAACCTGTGATACATTTACATAATAACCCACGTTATTAATCTAAATATAGTGCTGTCATTCCAAATGGTTTGGCCACCTCCCTGCAAACACAGGAAGAAACTGTCAGAACACGTTCTTTGTAACTCTAAGCTTGCATTTAGGGCAGTCTTAATGAAAATCATCCAGCTGTGCCCATAATCAGCCATTCTCGTCTATTCAGGCCTCGTAGATCACTCTAGTGCTACCAATTAGCAATCTTTTCTGTCTTGTTTCAAAGACCCGCTGAAGGAATACCAGCCTTGCTCTCCAATGTCATTTAACCTCACTGCTGCAGGTCTACACAGCACAACAAGGGAGCTGGTGGATCCCAATGGATAGTGAGCCAGTTTATATGACTGCAGGGAAACAGACAACTTGCTTAAAACATACCCTCTGCTAAACATGGCACTATCAAATTTCAAGACCAAAACCTAACATGAATACAGTAATACAAATGAGAAAGCATACATAACAGATTGTAATTCTTCTTGTCCGTTATAAAACAACTCCAGGTAACAAAGTGTCTTGGTGGCCTGCACTCCTAATGGCTACAGTTACATTCATACCTTCACCAAACTCCATAGCAAAATAAAAAAAAAAATTACAATCTGTAACTGTGGTTTCCATAAAGGATTCCAAAACTGAGTAGCTGCCCTATTGCTGCATACAGCTCTAGGTGGAATCATCTGCAGTGCATGTGCTCTACAGGAGGAAAAGTTTCATACAGGTAACCTGTATTCTGCATCTGAGGACTTGGCAAGGTCTGAGCGTACCCACAAATGCTGGGGAATATATAATTCATTTTGGTTAAGCAGAACACATCTACAGTATAAAAAAAAAAAAAATCAATCTAAGCTTCTCTTGTAAAATAAATGCAGAATCCTAACTGCAAACAGAATGCGAAGTGTAACACTTTAAAAAAAAAAAACTAAGTAGCCATAATGAGTGCAGCTGTACTTTCTTCTAG
Seq C2 exon
ATATGTCTACAGGATTGTCATGGATGAACCAAGGATTACTTTCAGCACAAGCAGTTTCACATTCAGAGATAGCAGGAGGCACTTCTGATTCAAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025759:ENSGALT00000045629:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.412
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.6=100)
A:
NA
C2:
PF087815=DP=PD(5.5=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]