DreINT0162317 @ danRer10
Intron Retention
Gene
ENSDARG00000042835 | tfdp2
Description
transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
Coordinates
chr15:4432052-4435408:-
Coord C1 exon
chr15:4435242-4435408
Coord A exon
chr15:4432095-4435241
Coord C2 exon
chr15:4432052-4432094
Length
3147 bp
Sequences
Splice sites
5' ss Seq
CCAGTACGT
5' ss Score
7.19
3' ss Seq
TTTGGTTTTTTTCCCAACAGATA
3' ss Score
10.91
Exon sequences
Seq C1 exon
GTGTGAATACCTCTTCAACTTTGACAACACGTTTGAGATTCACGATGACGTTGAGATCCTGAAGCGGATGGGAATGTCTCTGGGCCTTGAGAACGGCACATGCTCTCCACAAAACCTCACTCTGGCCAAATCTCTGGTGCCCAAATCTCTCGAAGCTTACATCACCA
Seq A exon
GTACGTGTAAAACATTTTGGGTCCCTCATAATCGTTTTCTGTTAGGTTAACATGAAGGATTTAGGATAGCTTATCAGTCTTTACAAATTTAAGTAGACTCATCATCCCCCATGCTTCACTCTGGGTATGCAACAGTCTGGGTGGAACGCTTCTTTGGGGCTTCTCCACACCGTAACTCTCTCAGATGTGGGAAAGGCAGTGAAGTGTTTCTTTTTTTTTTCTTTGGGTGAACACTTAACACTTTATTTAACAAGTTTGTTTTCTGGACACATGTGCTCGGTTGTATACTATATTAATAGAAGAGTTCACTATCAGACAAACAGTTTAAATTTTAAAACAATTAAGTTGTCTCCAAAAAAAAACGAAAAAAGGTAAGAATGGTGTTGTTTCAGCTCACTTAAAATAAGTAGTTTAAAAAAACAGCAAACATAACACTTTTTGAGTGATTTCTTGCGCTTGACGACAAAATCTCCCATAAACTTGTTGTTTTCATACAGTAGTGCTTTAAAATAGACGTAATTGTCATGGATTTTAGATGTAGTAGAGACTATAGTATAATAGTCATATCTCAGGATTAGATTATTCATTAAATCCTTGTCAAGAGCATGCCAAACCAAAAGGTGGCAATACACTTCCAACCATCAAGTCATGTTGGCCAATCAGAAGTCAAATAAAATAAGTAAATAAATAAACCTTTCAAAGGTTTTGCTTTCAGTGATCAGATACTGCGTTTGTTTGTAGACAAATAGCCAAACTGCATTGAAAAAGCTACCGTTTTGGAAATACCCGCTTTCGTGTGGACACATTAGTTATTATCATAAGCATTTTTTGTTTGTTTGCTTATTAAAGAGTTGTGATTGAACTGGTGTTTTTACTGTGTTCATATACTCAATCGTATAAATCAAATAATTCAATTTGCATTCTGTGCAAATCTACTTGCAAGTCTGCAAATAACTGTTGCACTTTGCTTATCGCTTATTGCTTTACACTATAGCCACAGGTTTCCTTCCTGTTCACATTCCCTTATCGAGTACGCCTCTCGACATACAAATGTCAATGCATAGAAGCCCACGGTGTGAAAAACTGCATCAGTCTGTACAAGGTCAGAGCAGTCATAACTAGCATGTTGGCTTTCTTGTCTCCTCCCTTAGGCCTGGGTATAGGACTTAGATGAGTGACAAAGGGTGGCCATTTTGAATCCACTTTCTGCTGATTGCTAAACCAGATTGACTCGCATGCTAAATAACCAACCTACCAATACACTCTCATTCATTTAATTCATGAACGACATCTACTCTTAAAATACATTCACAAATGCAGATCTATCTCTTTCAGAGTCTAAACATCAATTTGGTTAATGAATACTGCATTTAATAAATCACAATGCTTTAAAACTCAAAGGCTATTGGCTCAGTGATTGGTTTATTGACAAGAACCGACTAATCAGCTTTAGACTTTACATGGATTATTATACACATTTCACTACTAATGGTGGACCAGTTACCTCAGACAAACACAAAGCACTCAATTTCTAATTTTATCCATAAATGAACTTGTATCAGAGCTGCAGCAAGCTTCTGTCAGAGGTGGTTCCTATGAGAGGACAGCTGATGGGAGCCCAAGCTGAGAAGTGTATTGAAATTGAGCGACACATCTCAAATTTTCCAATAGGTTTTAGACGCAATAACGTATGGGAACGGCCCCTAATCAGCATAGGGTTGCAAGATAATGGAATTCGGTACCAATCGATACTGAAATTGTAAAATCGTTCATTTCCGGCTAACATTTGAGCACTGTTGAGCGAGTAATTAAATAGGGCTGATTTGCCATTGGGTTCCAATGCTCAACAGAAATGACTGTGATTGGCCGTGATGGTCATCAGTTCACCAAACTCAGCACTGTTTGCTGAGTGTAACCACAGATACAGGGACACTGGAGTGTTTTAAAGCCACGATTTATCAGCGGATCACTCATATGTCAACTTATTGACAGAACAGCGGATCGACGTGACTTTGAAACACTCAAGTGTTTCTGTATCTGTGGTTACACTTAGCAAACAGTGCTGAGTTTGGTGAACGGATGACCTTTACAGCCATTTCTGTTGAGCACGTGAACACAATGGCAAATCTGTGATGATTAAGAACGCACTCAATAGCACTCAAATGGACGGGAAATGGACATTTTCAAAAAATTTGTATCAATTGGTACTGAATTCCTGTATCGTGACAACCCTAGTAGGGCATCCACCTAAGAATGCATTACAGTAATCTAATCTAGAGGTCATAAATGCACAAATAAGCTTTTTCCATCAGACTTTGAAAGCCTGTATTGTAATTGTGTTCACATGCTCAACATAATAGACTGTGATTGGCCATGAAGGTCATCAGTTTACTGAACTCGCCGCTGTTTACTGAGTGTAACCACAGATATAGAGAAGTCGATTGGTTGATTCTTGTCACATGACGCACGTCATGAATAAACCCATCACTGAGCCAATAGCCTTTGAGATTTAGAGCAATGTGATATATTGAATGAAATAACAAACACTACGTTCGTTGACCAAATTGATGTTTAGAGTCTGGAAGAGATAGATCTGTGTACGTGGATGTATTTAAAGGTTGTGTTTTAAGTGTGTATTGGCAGGTGGGTTATTCATGGCCCGTTTCCACTGAGTGGTACAGTACGGTACGGTACAAGTTGGTACAGGTCAACTTTATCAGGCTTTTGTTTTGTATATCTGTGGTTACACTCAGTAAACAGCTGTGACTTTGGTGAACTGATGACCTTTACAGCCAATCACACTCATTTCTGTTGAGCACGTAAACCCAATGGCCAATTAGCGTTATTTAATTACGTACTCTAGCGATCAAATGTTAGCGGGAAATGGACGTTTTAAAAATTTCAGTATCGACTAGTACCAAATTTCAGTATCATGACAACCCTAGTATGGCAACCACCCAGAAATGCATTACAGTAATCTAACCTAGAGGTCATAAATGCACAAATAAGCTTTTTCCATCAGACATTGAAAGCCTGTGTTGTAATTTAAAACAGCTTTCAAATGAACGTGTGTCGAGATGTTTTCGTAATACATTTTTGTGTTTGATATTTAATACCTAAATATTCGTTTGGTTTTTTTCCCAACAG
Seq C2 exon
ATATGGCTAGAAATTCCACCAGAACACCTCTCAGCCTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042835:ENSDART00000155619:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.533
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.6=100)
A:
NA
C2:
PF087815=DP=PD(5.5=53.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]