BtaINT0147365 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006222 | TFDP2
Description
Bos taurus transcription factor Dp-2 (E2F dimerization partner 2) (TFDP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075241]
Coordinates
chr1:128020824-128026833:+
Coord C1 exon
chr1:128020824-128020990
Coord A exon
chr1:128020991-128026727
Coord C2 exon
chr1:128026728-128026833
Length
5737 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GTTTTTGTTTTTTCCTATAGACA
3' ss Score
9.88
Exon sequences
Seq C1 exon
GTTTGAATATCTTTTTAATTTTGACAACACCTTCGAGATTCATGATGACATAGAAGTGCTGAAGCGAATGGGGATGTCCTTCGGCCTGGAGTCAGGCAAATGCTCATTGGAGGATCTGAAACTTGCTAAATCACTGGTGCCCAAGGCTTTAGAAGGCTATATAACAG
Seq A exon
GTATGTTAACTAATGCAGTCAATGTGGTCCTTGATTAAATGTCAGACCCTAACTCGCTAAAACCTTTCTCATAGAAAATTAGTGCCCGCTATCTGCCCCGTCAGTTCTGTTCCCTTACCCTGAAATATAACCTCTCGAATTTCTTATGTTTCACTACTTTTCTTTAGAGATGCAAACACAAAAAAATACAGTGAGCTGGAAATAATTTATTATTTAGTTTTGTCTAATTCTCACCTTTATAGAAATGGAACCAAACTGATATATTCTTTGGTGATTTGACTTTCACTCAACAACATGTTCTTTAGATTTAGCCACAGGATTTCACGTAGCTGTAGTTGATGTATTTTCACTGCTGTGTGGAATTCCAGCATGTGGAGAAGCACAGTTTCCTTGTTCATTTTACTGATGATAAACCTTTAGTTTTGTTTCCCATCTCTTGATACTTAAACAGTGCTATTTGAACATTCCCACTACTGTTTCTCGGTGACCGTGTGCATGTATCTGCGAGTGAGATTGCTGGGTCCGAGGCAGGCCCATCTTCGTCTTTATTAGATGATGCCATGGCTTTCCAACTTGATTTTAACACGGTACACGCTCACAAACAGAGTGGAAGTGTTTTGTCTTCCCAGGCAGGTGGATGTGAACTGGTATCATTATTTTTTATATTGATATTTAATTCCCATACTGTGTGATATACCACTTTAAAGTGTAGAGTTCAGTGATTTTTAGCATATTCACAAGATTTTTTGTAGTCATCAGTTCAGTTCAGTCGCTCAGTCTTGTCTGACTCTTTGCGACCCCATGAATCACAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACTCAAACTCATGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTAGTCGCCTTCTCCTGCCCCCAACCCTCCCAGGATCAGAGTCTTTTCCAGTGAATCAGCTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTCAGCATCAGTCCTTCGAAAGAACACCCAGGACTGATCTCCTTTAGAATGGCCTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTTCAACACCACAGTTCAAAAGCATCAATTCTTCGGCGCTCAGCTTTATTCACAGTCCAGCTCTCACATCCATACATGACTACTGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCCATCTAGGTGGTCGTAAGCGTCTTTTAATTTCCTGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCGCAAAAAATAAAGTCTGACACTGTTTCCACTCTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTAGTTTTCTGATTGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTCACTTTCTGCCATAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCTGGCAATCTTGATTCCAGCTTGTGTGTCTTCCAGCCCAGCGTTTCTCACGATGTATTCTGCATGTAAGTTAAATAAACAGGGTGACAATATACAGCCTTGACAAACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTATTGCTTCCTGACCTGCATATAGGTTTCTCAAGAGGCAGATCAGGTGGTCTGGTATTCCCATCTCTTTCAAAATTTCCCACAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGAAGTAGTAGATGTTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGTGGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCTGGAAGTTCACGGTTCACATATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTTTATTAGCGTGTGAGATGAGTGCAATTGTGTGGTAGTTTGAGCATTCTTTGCATTGCCTTTCTTTGAGATTGGAATGAAAACTGACCTTTTGCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTACAGCACTTTCACAGCATCATCTTTCAGGATTTGAAATAGCTCAATTGGAATTCCATCACCTCCACTAGCTTTGTTCATATTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCTGGCTCTAGGTCAGTGATCACACCATCGTGATTATCTGGGTCGTGAAGATATTTTTTATACAGTTCTTCTGTGTATTCTTGCCACCTCTTCTTAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATCGAGCCCATCTTTGCATGAAACGTTCCCTTGGTATCTCTTAATTTTCATTAAGAGATCTCTAGTCTTTCCCATTCTGTTGTTTTCCTCTATTTCTTTGCATTGATTGTTGAGGAAGGCTTTCTTATCTTTTCTTGCTATTTTGTGGAACTCTGCATTCAGATGCTTATATCAAATTGCAAACACTCAAGCGTCAGGGAACACATGCAAACTAACTTCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGTGACTCCATAGACGGCAGCCCACTAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCTTTCTCCAATGCATGAAAGTGAAAAGTCAAAGTGAAGTCGCTCAGTCGTGTCTGATCCTCAGCGACCCCATGGACTGCAGCCTTCCAGGCTCCTCCGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGTAAGTAGCAATTGAATTCAGCCTGTTTAGGAACCACAGTTTCTCAAAGTGGGGAAACAGGGCAGAGCAGTTGAATAGACTTTGAACTTTCAAGTGCTAAATAAGTGGCCATAAAACATATAAACAAGGATAAAGTCTATTTAGTCTGGAAGCATGAGTGCAAGTAGGCTTTACATCAATATCTCTTTTTTAAAAAGTTTCCTTGATCTTATGGTAACTATATTTAGCATTCTGATAGTGCTGAACTATTTCCCAAAGCAGTTGTAGCATTTTACAATCCTACCAGCAATGTATGAGGGTTCTGATTTCTCCATATCCTTCTCAACACTTGTTATTGTTCATTTTATTTTATTACCACCACGGTAGTGAAAGTGAAACGGTATTTCACTGTGGTTTCGATTTGAATTTCCCCAGTGACTGCTGATGGTGAGCATCTTCTCATATACTAATTGACTATTTGTGAATCTTCCTTGAAGAAAGGTCTATTCAGATCCTTTGACCATTTTAAAACTGGGTTATCTTTTCATTATAAGAGTATACTTGAAAGCAGAAACACTTTGTCTTGCGTGTCCTAAAATTCAAATTTTCAATAAGTAAGAAATCTTTATGATTATAGTTCTTAAAACTATGGTATATTGTGCACATATAATTTGGGTATACAAACACAAGTGTTCTACCTTTTTGCCAGTTTCCTTCATTTATAAGTATTACTACCTACAGTTTCATACTGTATCTTAAAGGCACTTTAATATTAGCTCTAACGATTATTAAGCCAGATATAAAGCAGTTGCTGCTGTTCTATGGTTTTAGCCACAACACAAGAGCCTGGATTGAGATTTGGTTTTTATTGCAGTTAGTGCTTAAATTCACACCACACACTTCCTGTCTGACCCCCGCGTCTTGCCCTTCAGCCTCCCAGTCCCCTATTTGCACCCCCTGCCCCCTCCCCCCCATTCTCCCCTTGCTCCTTCCAGAAGAAGACCTGCTGTTTTCTTAGCAGCTCAGGCATTCTAGTCATCCAGTAGGGTCTGCAAAAGGCTCTTACTCTGTAAGTCACCAGGACTTTATTTTAGCTCATTCTCAGTGAAAAGACCAGGCGATTAGGTGGGCTCTGTGGTTTTGATCTCTTCATGACCTCGTTTCCAGACTAGGGTAGACTTTCTGGTTGGTGCAGAAGCGTGTGCCTCTAGCGTGCAGAGGGACAGGATGGCCCTTGAGGAGGGTTGTGAGAACTGTCGTGTGGGTTGGCCTTTCAGAGCCATTGTGAAAGGAAGCTGTATCCTGTCAAGAGCTGTGTTCTGACAGAAGGTTTCCATACATACTAATTAATAATACTTGGTGCAGGATTCTGGCTTTAACTTCATGTACCAACTTGTTCTTGTATCCATTTAAAACCTGCTGTTCTTAGAATTTTTTCCCCCCTCACAGCTGCTTTAGTTAGCCTGTGAAGAAAAGGTTCACAGGCATGTCAGGATGAATGCAGGAGTTACTTTACTTGTTTCCTGCACGGGAGCCTCTCACTTGATCACGTAGTGCTGGGAGGGCAGAGCCTCCAGTCCTAGCACGTGGTTTTTTTTCTTTTTTGCACAATAATTACCAGACTATTTTCATTAATAAAAGCTCATTTTGGCAGTTTACCTTTTTCTGAGCCTATGCTTGGTCTCATCTTACAACATAAGTCAAATAACTTTTTCTCAAGAAATTCATTTCTGATATTTCTACCACCTGTGTTGTAAACTCACCTTTGAAATACACGATGCTCATTCATTAACATTTAGATTTTATTTGTCCCAGTCACTGCCTTCTCTGAGCTAACCATCTAGATAAGGAGACAAGGGTTAAATAAGTTACAGGGCCTCCCTGGTGGCCCAATGGTAAAGAATCCGCCTGCCAATGCAGGAGACACGGGTTCCATCCCTGATCCGGAAAAATCCCACAAGCCAGGGAGCAACTAAGCCCGTGTGCCACAACTCCTGAGCCTGTGCTCCAGAGCCCAGGAACCACAACTGCCAAAGCCCGCGTGCCCTAGAGCCTGTGCTCTGCGGCAAGAGAAGCCCCAACAGTGAGAAGCCTGCGCACAGCAATTACAGTGCAGCCCCCACTTGCCACAAGTAGAAAAAAGCCTGTGCAGCAGCAAAGACCCGGCACAGCCATAAATAAATAATAATAAAGTTACAGTAAGAAGTAGTCAGGGTTGTGATGGGGGAAATACAGTAAATGCATAGAAAACAGGACTGCAAGGATACATCTCCAAAATACTTGATGCAGACTGAAACAGCAATGCCCTCATGAAAAATGTGACTGTGCATAGCCTTTTAAAATAAGGTTTAGTTCAAGCTTTAAAGCAAAGGATACCAGGAAAAAGAATAAATCTTGGTCAGTAATAGCACTGAGTTCCCAGGGGGGCACTTGAAAACATGGCAGTGGGTGTGGGGGTTGAGCAAGAATGTGTCTGTGCCTCTGACATAGGACGTTCTGACTTAACTGCTTATCCACTCCTGCTCTGGTTGTTAACACCCCAGTCAGAGGCTTTTGTGGTGCATCCAGCAGGTGTCCAAGAGTAGTGCAACCATCAATATATTCAGTGGGATGCCCTCTCAAGGGCTTCTGGAAGAAAAAAAGAATGAAGAGTCTGGGCTTGGTCGAATTTGAATTCTTTCCAGCTGTAGTCTGTCTCCCTGTATCCTCCCCCTTGCCCCAGTCTTATGTTCTAGAAATTTCCTTTTTCCAAGCTGAAGAAACCTGGGTTCTCCCCAGGGCAGGAGACTGTAACAGAATGGGCTGCTTGCCTCATTCGTCCGTGCTGTCTTCAGACCATAGCAAAAGCAGCCACGGGACTTACCAGACCTCCATCTGTTTTTGTTTTTTCCTATAG
Seq C2 exon
ACATCTCCACAGGACCATCTTGGTTAAATCAGGGACTGCTTTTGAACTCTACCCAATCCGTTTCAAATTTAGACCTGACCACTGGTGCCACCTTGTCCCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006222:ENSBTAT00000008169:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.9=100)
A:
NA
C2:
PF087815=DP=PD(4.9=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development