GgaINT0034485 @ galGal3
Intron Retention
Gene
ENSGALG00000002753 | F1N8A4_CHICK
Description
NA
Coordinates
chr9:11425524-11430555:-
Coord C1 exon
chr9:11430389-11430555
Coord A exon
chr9:11425624-11430388
Coord C2 exon
chr9:11425524-11425623
Length
4765 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GCAGCTGTACTTTCTTCTAGATA
3' ss Score
6.87
Exon sequences
Seq C1 exon
ATTTGAATACCTCTTCAATTTCGATAATGCTTTTGAGATTCATGATGACAGTGAGGTGCTGAAAAGAATGGGAATGTCCTTTGGGCTTGAGGAAGGCAAATGCTCAGCTGAAGACCTAAGAACTGCAAAATCTCTGGTGCCAAAAGCTTTAGAAGGCTACATCACTG
Seq A exon
GTAAGTTAACTGTCACTTTTAAATATTGTTCCTTGTCAAAATCATAACGTTAGCTAACCAAAACAAGTTTAGTGATGTTAACCTACGTAGGTATGTTACATTTAAAGTTAAGTGAAAACCAGTAGGGCTGGTGACAAACTTTCAAGGGATCTGCCATAATAAGAAATTATTTCTTAAGTAACTAAAGTGACAGTAAGAACAGCTTTTATTCATTTTGAATGACTGCATATGTGTGGAAGAGCAAACTGACTCAGCTGCATTCACAATTGGAGGTGGTTGGGCTCTAAGACTTATCCGTATCTCTGTCCATGTAGGATGTGCTCAGTGTTGTGTGCGTGCTCTTAAGTACATGGACTGTGGGTTCTCCTGCTCTGGTTATTATCTTGGCCAGTCATTTTTATACTCCCATTTACAATGGGAAGCTGTGATACTCAGACAAAAAGTGGCCAGCACGTGCCATCTAAGAACTGAGCATCTGTAAGTAAAGCAAAAGATTCCAAAGAGGAATCCATGTTAGGTCCTTAAAATATGTGATGTCAAAGAATTGCTGAAAATAAATCAGAATTCAGTTGCATTCACTGAAAGCAATATGTTTTACGTGGCTTAACATTTCAAACTACTACCAATGTGCTTATATTAAAATCAAAACATGCTTGTTTTTCCTGCTCCACTCGTTCTGTATATTTTAAAATTCAGAATTCATCTTTTAATTTCATTCACTCTTGGAATTACACACCTGTCTGATACTGCACCAGTGCCAAAAAAAAGTCCCCAAGGAACAAAGTAACAATCCTTTCAGCTTGATGCAGCCAAGTATTATTTATCACAAATTACCAATACCAAAACAGAAAAGGAACGGAACCACATCTTCTAATATCGCTGAAGTCTTTTGGTTTTCTTAATTGAACCCCTTGTACTGAAGAGCAAAATAATTTTCTATTTAATTTTAATCCTGCATTCATGCATATTCAGAGAATAGGATTTCTTCAAATTTGAAAGAGTTGTTTGTTACCCTCTTTTCTGTGTAAAACCAGCTTTTAAAAATAAAAAAACCGCACATATCTAAATCAGTGATTAGTAAGGCATATTAACTTGTTTTGAAAAAAACATCAGCCACACCAATGTACGGCTGGTGTGACTTGTACTGAAAGCATTGCAGGCAGACAAGCACAGCGTTCCCATACAAGGAAGAAACAAGATGTACTCTGTTCCCATAAATAAATAAATAAATAAATAAAATAAACAGCTCAAACATACATAAGATTGCATACTGCAAGAATGCTGTGATTAGGGTTGTTTCACCAGTAGCAGAGCAGTAGCCAGAAACCTGTCTTGAGTTTTAATAGGAAACCTATTGATCTATGCTTTTACTTGAAATGCATTGAGGCAGATACTGTGTTCTTTAGACATGGGTTAAATGTAGCTGCTTCAGCCTCTGAAATAACGTGTTATTAGAATAAGTACATTCACAGACGTATTCTATTTCTATTTTTGTATTCTGTTTGCAACTTAATTACACGACACAAATCTAGAGTTAATGGTACAGATTCAGTTTATATAGTAGAAGTTTCTAATTTTGCTGACAAATAAGGGAAAGATTTAAAAGTTTTGCACAATACCTGAAAATCCGATTTGCCTGATTACATATCTCAGTTCAGTATAACCTCCCATTTTAACCTGGGCAGTTTTCAGGCATTGTTTCTTCCACTATAGGAGCAGTGGAACAAGAGGGTAATTACTGTTTTCTGGAATTCATGGTTTACTTCCAAAGCTCTCATTGACAGCCCATTAAGTACACAGACTACAAATACAACTATACTAGAAAAGCAAATCAAAAGCATGTCTCTTATTTGTTCACTGAATAAATTTGTTACAGTCAAGATTCAAGTTTTCCTAGAGTAGCTGCCTTCATGAAAGCAGTCCTGTTCTAATATGTCTAAAAGCAGTAGCTTCTTGCCTTCTAGTTGCATTCAACATCCAGATAATTTGCATGGAAACTGCTGAACTGTTACCATATGCATCAAAATCTGAGGTTTTTTTTTTTTTTTCCAGAAGGATTATGTATTTTAGCCATTCTGTAAGTGGCTTCACTTGCTAAAAAGTAATGCTTCTTATCTTTTTCTACTGGTTTCATGATGTTTCCCCAAAAACACCGTGTGTGTATATATATATATATATATATGCATACATACACATATACATACATATGTACACACACACATATATACACACACACGTGTGTATATACATACACACACTACACACTTTATTTTTAAGAACTACAATAGTGTGATCCTCAAGTGTCTTGACTGCCATTAAAATAAACAGAAGCTGAGACATATTAACATCATGTAGAAAGAGAATCCATACACCTTAAGCTGTGTTTTTAACACATTTTTCTATTGCTCTATTCTTTGCTAACAGTGCATACTTCTAAAGCTGACAGGACCACCTTAACATTTATTTATTTTTCCCCCCCAAAAGGGAACAAAAGTAAAAGTTAAAATGGCAGCATTGCTTTAGCTAAGCAAGTAATCCAGGGAAAGCAATGGACAGATAACAGGATGCACTACAACCACTTGCCAGCTTCTTATTACGGAAAGAGAAACATTATCTTTGATACTCTACACTTCCACCAGCTTTAAGATAGCATCCCAGGGTCTTACACCTGAAAAGTTCTTATTTGGCAGAGGAATTTCTGGCTATGTAGCACATAGAACTAACCAAGGGCTTAGACCAGAACAATCTAAGTGTAAAGGAGGGAGTGAGAATCTAGTGGAAGGACAGAAACATGTCACGGACTGAGATAAGCATAAACTCTTGTATAACTGTATCCAAATCCTGTGTATTTTAAGCCATACCGATTCTACAGCTGTTAACGCAAAACCAGAGGCCTGCCTTTGTCAGCTGAGTCCTCACTTCTAGAAATGAGACTACAGAGGAAAAAAAAAGGAATTAAAAATTCTAAGGCATTAATAGTTGTGGTAACAGCATCCCACTTGTGTGTTGCCACTAAGGCAGCAGACCAAGCGGTGTCATTTAGGTCCTCTATACTAAGACACGTCTTTATTCTCCCCTGCATAAAGTGCTTTGCAGTCTACATAAATTACAAGCCTGGATCAGAGAACAAGCTGGAGATGGAATGAAAGATGTGAATACTGATGAATGAATAAGCTTGTTCAACTACCAGCAATAATCTTCTGCAACACTATCTACGTCTGCATTAACTGCTAAAGGCTAGTGAAGGTACTCCTTTGGAGCCTTCTCATGTCATATAGAAGTTTCTACCAAATGCATCTGCAGCAAGTACATGCCTGGTTCATAGTAAAGAAGCCACTCTTAGATGAAACTGCATCATCTTGGAAAGGTTCTTCAAACTGATCTCCCTGATTCATACGTGCAGCTACTCTACCAGATGTAGTAAGACTTGTAATCACAGACAGACTTCTATTTTGGCAGTCCCTTCCAGACAGGGAATGGCTTCTTACACTCTCCATCCTGCACAGACTTTTTATTTTCCCTGTCTCCTCTGAGCCCAACTGGAAATCAGCATTTAGGAACACTAGGCAATGAAAGTACAGGGCAAGGATATGCATCCTTGAAACTTTTCTGCCATATGCATTACATCCATGCCGTCTTCCATCCTGCTCTTCAAAAAGAAGGCAGCAATTATCCCAAAATGCTAATTAAACACAAAATAACTAGCACTGACTTGCTACTCTTCTGGAATATTAAGCATGTAGACACAGGTACACCCTTGCAAAAGACCAGGGGAAAAAAAACCTGTGATACATTTACATAATAACCCACGTTATTAATCTAAATATAGTGCTGTCATTCCAAATGGTTTGGCCACCTCCCTGCAAACACAGGAAGAAACTGTCAGAACACGTTCTTTGTAACTCTAAGCTTGCATTTAGGGCAGTCTTAATGAAAATCATCCAGCTGTGCCCATAATCAGCCATTCTCGTCTATTCAGGCCTCGTAGATCACTCTAGTGCTACCAATTAGCAATCTTTTCTGTCTTGTTTCAAAGACCCGCTGAAGGAATACCAGCCTTGCTCTCCAATGTCATTTAACCTCACTGCTGCAGGTCTACACAGCACAACAAGGGAGCTGGTGGATCCCAATGGATAGTGAGCCAGTTTATATGACTGCAGGGAAACAGACAACTTGCTTAAAACATACCCTCTGCTAAACATGGCACTATCAAATTTCAAGACCAAAACCTAACATGAATACAGTAATACAAATGAGAAAGCATACATAACAGATTGTAATTCTTCTTGTCCGTTATAAAACAACTCCAGGTAACAAAGTGTCTTGGTGGCCTGCACTCCTAATGGCTACAGTTACATTCATACCTTCACCAAACTCCATAGCAAAATAAAAAAAAAAATTACAATCTGTAACTGTGGTTTCCATAAAGGATTCCAAAACTGAGTAGCTGCCCTATTGCTGCATACAGCTCTAGGTGGAATCATCTGCAGTGCATGTGCTCTACAGGAGGAAAAGTTTCATACAGGTAACCTGTATTCTGCATCTGAGGACTTGGCAAGGTCTGAGCGTACCCACAAATGCTGGGGAATATATAATTCATTTTGGTTAAGCAGAACACATCTACAGTATAAAAAAAAAAAAAATCAATCTAAGCTTCTCTTGTAAAATAAATGCAGAATCCTAACTGCAAACAGAATGCGAAGTGTAACACTTTAAAAAAAAAAAACTAAGTAGCCATAATGAGTGCAGCTGTACTTTCTTCTAG
Seq C2 exon
ATATGTCTACAGGATTGTCATGGATGAACCAAGGATTACTTTCAGCACAAGCAGTTTCACATTCAGAGATAGCAGGAGGCACTTCTGATTCAAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002753:ENSGALT00000004347:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.412
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.6=100)
A:
NA
C2:
PF087815=DP=PD(5.5=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]