HsaINT0166149 @ hg19
Intron Retention
Gene
ENSG00000114126 | TFDP2
Description
transcription factor Dp-2 (E2F dimerization partner 2) [Source:HGNC Symbol;Acc:11751]
Coordinates
chr3:141671753-141678682:-
Coord C1 exon
chr3:141678516-141678682
Coord A exon
chr3:141671859-141678515
Coord C2 exon
chr3:141671753-141671858
Length
6657 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GTTCTCATTTTTTCCTTTAGATA
3' ss Score
10.32
Exon sequences
Seq C1 exon
GTTTGAGTATCTTTTCAATTTTGACAACACCTTTGAGATCCATGATGACATAGAAGTACTAAAGCGGATGGGAATGTCGTTTGGCCTGGAGTCAGGCAAATGCTCTCTGGAGGATCTGAAACTTGCGAAATCCCTGGTGCCAAAGGCTTTAGAAGGTTATATCACAG
Seq A exon
GTATGTTAACTGATGCTTTCATGTGTTGTCCCTGATTAAATGTTGAATCCAAACTTGTTAAAACCTTTCTTATAGAAAATTGCAAAATTTTAGAACATCTGTGCTTGTGTCGACAAACTGAAACCTTTAACACTTTAGGACCATTTTTTCAAAAATTAGATTAAATAGTTTGTTTCATAACATTATGAACTTACATCTATACACCACACATTATATACTATTACATCTAAATTGGCTCACTCAGCACTGAATTTGGCTCTTCAGAGAGATCTTGTAATTCCCAGTACCTAGCTTAGAGCCTAGTTAGAGTAAGCTAGTAAAAGCTCAATGAGGGAGTTTTAAAAAATCTTCTCTTAGTGCCCTGTGGATACTTCAAGGGAAACTTTGGGCAATTTACAAAAGAAAGTAGGTACATCCTGGCCGGGCGCTGCAGCTCACACCTGTAATCCCAGCACTTTGGGAAGCCAAGACGGGTGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTGATGGCACATATCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGTGGAGGTTGCAATGAGCTGAGATCGCCATTGCACTCTAGCCTGGGCAAGAAGAGTGAAACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGTAGGTACATCCTACTTCCCTCTAATGGAAAATTTAGTATATCTATTATCTGCCCATACATAAAAACATTTGATTAATTGAATTCAGAGAGGAGGAGTGGACTGAAAGTTTAAATGTCAGGGGAAAAAAGGGCAGAACGGGGTAAACCTGGATTCACATTTGTGTACGCTGCTCCTCTTTACAGTAAAACTTCTCAAGTTGACCATATTTACTGTTCCTTCTTCCTCTTTCCCCAGTCTTAAATTGTTCTTATTAAATACTGAGTAGATACAAAGGTTGTTTACGTCTGTAGACTCTGAAGGGTCACAGTACAGTAGACCCCCATGAATCCAGCACCCAGCTGAGGAAAGCACATTACTGTTCCAGTCCACTGCATGCCCCTGCCCCAGGCTCTGTGCCCTTTCCCACCCCTCAAATATAACCATTCTCTTACATTTCATTGTCATTCACTTGCATTTCTTTAGAGATAAACCAAAATGGTAAACTGGAAATAATGTATTATTTAGTTTTGCCTACTTCTGGCCTCTATATAAGTGAAGTCATAGTAATATACTCTTTGGTGATTTGATTTTTTTTCACTCGATATTATGTTCTTTAGAGTCATCCATGTGATTTAATATAGATATAATTCATACATTCTTACTCCTGTGTAAAATTCCATTATATGAATACATCACAGCTTATCTGTTTATTTTACTGAAAATAAACTGTTTGTTTCCGATTGCTTGATGTTAAAATACAGTGCTGCTTTGAACATTCCTATACATGTATCCCAGTGACCACATGCAAACGTACAGATTGAACTTGTTAGGTCAGAGTTGGGTACATCTTCAGCTTTACTAGATGATACCAAAAATTTTCAATTTGATTTTACCAAATTACACGTTCCCCAGCAGAGTAGAAGTGTTCTATTTTCCTAATCAGGTGGGTCTGAAATGATACCATTGTAGCTTTTCTAAATTGAGATTGAATTCACATGCCATAAAATACACCATTTAAAAATGTCAGTTCAGTGATGTTTTGGTATATTCACAAGGTTGCTAATCATCACCACTATCTGATTCCAGAATATTTTAATTTAAAAACCCAAAAAGAAACCCAAACCCATTAACAGTCTCTATTCCCCCATTCTCCCTCAGCCCCTGGCAACCACTAATCTACTTTGTGTCACTATGGATTTGCCTATTCTAGAAAGACGCTTTATGTGAATGGAACCCTACAGCATGGGGCATTTTGTGGATAGCTTCTTTCACTTAGTGTAGTGTTTCAAGGTTCGTTCATGTTGTAGCACCATCAGTATTTCATTCCTCTTTATTGCCAAATACTATTCCATTGTATGGATGGACCACATTTTGTTTATCCATTCATCAGTTGGTAGATATTTGGACTGTTTCCACTTTTTGGCTATCTCGAATGATGCTGCTGTTAACATTCTTATAAAAGTTTATGTGTAAACATATGTTTTTATCTCTAAAAACATATACCTACGAGTGAAATTGCTGGGTCATATGGTAACTCTGTGTTTAACATTTTAAGGAAATACCAAACTGTTTTCCAAAGCTCCTGTACCATTTACAGTCCAACCAGTGGATAAGTGTTCCAATTTCTCCACATCCTTACTTACTTATTTAGAGACGGAGTCTCACTCTGTCGCCCAAGCTGGAGTGCGGTGACGTAATTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTTGCCGCTATGCCCGGTTAGTTTTGGTATTTTTAGTAGAGACAGGATTTCACCATGTTGGCCAGGCTGATCTGGAACTCTTGGCCTGAATTCACCTGCCTCAGCCTCCCAAAGTGTTGGGATTATACATGTGAGCCACCGTGCCTGCCCTCCATATCCTTTTCTACACTTGTCACTATACATCTTTTGAATTATAGCCATCCTCACAGAAGTGAAGTGATATCTCGCTGTGATTTTTGTGGGGGGGGTGGGGCAGGGTGGTGGTGGAGGGGAGAGAGTCTTGCTCTCCAGGCTGGAGTGCAGTGGCGCAATCTCTGCTCACTGCAGCCTCGAACTCATGGGCTCAAACGATCCACCCACCTCAGCCTCCTGAGTAGCTGGGACCACAGATGTGTGCCACCATGCCCGGTTAAATCTTTTTTTTTTTTTTGATATGTTTGGTAGAGATGGGGTTTTGCCATGTTGTCCAGGCTAGTCTCAAAGTTCTGAGCTCAAGCGATCCACCTGCCTTGGCTCCCACTGTGATTTTGATTTGCATTTCCATAATGACTTCTGATGTTGAGCATCTTTTCATGTGTTTATTGACTATTTGTATGTCTTCCTCAGAAATATGTCTATTCACATTGACTTTTTTTTTGAGATGGAGTCTCTCTCTGTTACCCAGGCTGGAGTGCAATGGTGCAGTCTCAGCTCACTGCAAGCTCCACCTCCCGGGTTCAGGCGATTCTCCTGTCTCAGCCTCCCAAGTAGCTGGAATTACAGGCGCCCACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCACGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCTTCGGCCTCCCACAGTCCATCCTTTGCTCATTTTTAAGTAGAGTTACTTGTCTTTTTATAGAGTTGTAAAGTTATACTGAGTATACTTGAAAACAGAAGCACTATGTTTTACATGTCCTATAATTAAGATTTTTTTCACTAATTTAGAAATCTTCCTGATTTTCCTAATTCCTGAAAATATTACATATTTTGTAGATACAATTTGACTATATAGGTTGGGTGCGGTGGCTTACGCCTGTGATCCCAGCACTTTGGGAGGCTGAGGCAGGCATATCACTTGAGGTTAGGAGTTCAAGACCAGGCTGACCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGACACATGCCTGTAATTCCAGTTATTTGAGAGGCTGGGGCAGGAAAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAACGGAGATTGCACCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTTTTAAAAAAAGAAATGAATATATAAGCAGTGTTTTTGCCTTTGCTTTCTTTTGTTTATTTTATTTGTAAGTATAACCATCTAGAATTTCACATCGCTTTTTAAAGGCATTTTAATACTAGGTCTAAGATACATTAAATCCAATGTAAGCAAAAAGGTAGCTTTAATTTTGTTTTATTCTATGATTTGGTCCTTTGCTCACAACAGAAGAGTTTGTTGGCTGAGATTTGGTTTCTGTTTTAGTTCTTCGGTTGGCACCATTCATCCCCTGCAAGGGCCCCCCGCCTCTCCTTGCCCCTCAGCCCACCTGTTCCGTCTCCCCACCCAGCTTTCCTCTCTCCACGCTCTCCAGCCTGGGTCCTGCTGTGTCATTGGAAGGCCAGCAGAATCTGAATAAAGGGCTTACTCAATAAATCACCAGAACTTTATTTTAGCTTACTCCCAGTGAAAAGGCTCAGGGCGATTAGGCAGGCTCTGTGGTTTTGATCTCTTCGTGACCTCATTTGCAGACTGGGATACAGACTTTCTGGTTAGTTCAAAGGAAGAAACATGTGCCTCTCGTGTGTAAAGGGGCAGAATGGCCTGGGTGGGAGTGTGAGAACCATTGTGTGGATCCTGTGATAATAGGAAAGAAATGTAGGCTTTTCCAATTCATTGTAAAAAGAGAATGTAATGTGTTATGCTCACAAACAAGTAAATAGCTGTGTTCTGACAGAAGGTTTCTATAGTTCTATATACTAATTAATATTCAGCACAAGATTCTGGCTTTAATTTTATTTTCTTGTACAGACTTGTCGTTATTTAATGTATTTAAAGTCTGCTATTCTTCTTAGACTTGAAGTCTCTTTTTTTTCCCAGCTGTCTCAAAGAAAAAGGTTCATAAGACGGTTCTAAAATTAGCATAGTCATTTAGTTTACTTTTTTCCTACGTGGGAATGGCCTCTTGTTTGGATACCAGAGTTTCCAATCTAAATCATATAGTTTCATTTTTTTGTATAGTAATTGCAAAAAGATTTTGATTCAATTAAATCATAGCTCATTTTGGCAGATTACATTTTCTGAGTATGTGTTTGGGCTTATAGAATTTCTTTTTAGGAATTACTTTTAATGTATCTACCACTTATTTTGTAAAGTGGCAGCTGACAGAGACTATACTCATTCATTCAGTAACTTTTTTGTTTTTTTGTTTTTTTTTGTTTTTTTTGAGACAGTCACTCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGTCTCTCTAGTAGCTGGGATTACAGGCATGTATCACCATGCCTGGCTAATTTTTGTATTTTTAATAGAGATGGGGCTTTGCTATATTTGCCAGGCTGGTCTCGAACTCCTGAGCTCAATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCCGCCACATTTAGATCTTACATGTTCCAGTTACTGCCTTCTTTGAGCTAACACTGTAGATGGGAAGATAAAAAGTATTAAACCAGTAAAATTACAATAAGAATTGATCAGTGTTGTCATAGGATAAATGTGGTATATGTATAGAAAAGAAGATGGCAAGGAGATATCCAAAATATTTTCTTTTCTTTTTTTCTTTTATTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGGATTACAGGCATGCACCACAACGCCCAGCTAATTTTGTATTTTTAATAGAGATGGGGTTTCTCCATGTTGGACAGAACTCCCAACTTCAGGTGATCCGCCCTCCTTGGCCTCCCAAAATGCTGGGATTATAGGCGTGAGCCACCGTGCTCAGCCCAAACTATTTTCTGTAGACTAAAACAGTAACGTCTGTGTCTGCCTCATTAAAAACATGACTGCATGTGACCTTTTTAAAATAAGAGCTAGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTAGGAGATATACCTAATGCTAAATGACGAGTTAATCGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACATTGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAAAAAAAATAAAATAAGAGCTAGTTTGAATTAGAAAGCAACAGACACCAGGAAAAATCTTGTCAGGAAAAAGAATAGATATTTGATGAGTAGCAGCATTGAGTTCACCAGCAGCAGGCACCTGAAAAGACATTGCGGCGGGGGTTTTGGCCAAAACATGTCTGTCTGCCCTCTAAGCAGGGTGGCCTTCTTACCTCATGTATTTCTGATTTGATTTTCTCTTTTCCCACTTCTGGCTTTGGCTCTCAACACCACAGTCCAGGTCTTTTGTGCTGAGGGCAGAAGGCATTGAGGGTGGTACACTGGGATGTATCCCATGGGCTGTGCTCTGGAGGGCTTATCTAAGAAAAAGAGTAAGAAAGTGCCTTTGAGTGTTTTCATTTGAATACCTTCTCTCCGTAAGCTGCCTTCCCGTATTTTTTTTTTCCTGCTCTTATGTTCTAGAAATTTTTTTTTCTTCCAAGAAGATGAAGAAACCTGGGTTCTTGTCACAGCAAGAGAATTGTCTAGCTGTCATGAAGAATAAGCTTAGCTCTTGCTTTTCTGTGCTTTCCTCAGACTGTAACAACAGCAGCCACAGAACTTGCAGGACCGACATTTTTTGTTCTCATTTTTTCCTTTAG
Seq C2 exon
ATATCTCCACAGGACCTTCTTGGTTAAATCAGGGACTACTTCTGAACTCTACCCAATCAGTTTCAAATTTAGACCTGACCACTGGTGCCACCTTACCCCAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114126-TFDP2:NM_006286:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.9=100)
A:
NA
C2:
PF087815=DP=PD(4.9=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)