MmuINT0180132 @ mm9
Intron Retention
Gene
ENSMUSG00000053211 | Zfy1
Description
zinc finger protein 1, Y linked [Source:MGI Symbol;Acc:MGI:99212]
Coordinates
chrY:71462-75586:-
Coord C1 exon
chrY:75035-75586
Coord A exon
chrY:71612-75034
Coord C2 exon
chrY:71462-71611
Length
3423 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
ATAATACATTTCCTATTTAGTGG
3' ss Score
5.46
Exon sequences
Seq C1 exon
GAGCTGATGCAGTACACATGGATAGTGACCAGATTGTTGTGGAAGTACAAGAAACTGTTTTTTTAGCTAATTCAGATGTAACTGTGCATAATTTTGTTCCTGATAATCCAGGCTCAGTTATAATTCAAGATGTTATTGAAAATGTTCTTATTGAAGATGTTCACTGTTCACATATTTTAGAAGAAACAGATATATCTGACAATGTCATTATTCCTGAGCAAGTTCTCAATTTAGGTACAGCAGAAGAAGTGTCTTTAGCACAGTTCTTAATTCCAGACATTTTAACATCTGGTATTACGTCAACCTCATTGACTATGCCTGAACATGTCTTGATGAGTGAAGCTATACATGTGTCTGATGTAGGACATTTTGAACAAGTGATTCATGATAGCCTTGTAGAAACAGAAGTCATCACTGATCCTATAACAGCTGACACTTCAGATATACTGGTAGCAGATTGTGTTTCTGAAGCAGTCTTAGATTCCAGTGGGATGCCTCTGGAGCAGCAAGATAATGACAAAATCAACTGTGAGGATTATCTGATGATGTCTT
Seq A exon
GTAAGTCTTGAGCCACATGGTTATCAAAAGTATGTTTTTGTTTTTACTGTTTTATTTTGTTTTAGACAGGGTCTTATGCTGAACTTGAATATGTGATTCTCTTATTGGACACTGATAAGTACTAGGGTTTCAAGTATATGCAACAATGCCTGAATTATTAAGCAGATGTTTTTCAGTTCATTTTGTATGTGAATATGCTTACTTGTTGGTGTATGAATATTCAGTTTTACAAGCACTGGTTATCGTGAATGTGGAAGCCAGAAATTTTTCTTCTTGATCATTCTCCCTTTATCTTCTGAGATCTCTCAGTGTACCTGAAGATTATCAATTCTGCTAGACTAGATGGCCAGTAAAGTTCAAGAATATGAGGCCATTTATATTTGTATTATTGTTTTTGGCCAAAAATTATACCTAATAGTGTATAATATTAGGTATTTGTTTAGGGTTACTATTTCTGTGACACAACGCCATGACCAGAAGCAAAGGAAGAGGAAAGGATTTACTTGGCTTAGACTTAACACTTTTTTAATCACTGAAAGAAATCAGAACAGGAACTCCAACAAGCCAGGAACCTGGAGGCAGAAGCTGATGCAGAGGCCATAGAGGGGTACTGCATACTGGCTTGCTCCCCATACTTGGCTCAGCATGCTTTCTTAAAGGGCCCAGGACTACCAGCACAGAGATGGCCCCACTCACAATGGAGTAGGCCTTCTCATGTCTTATCTATTTTATTTAAAAAGTTCCCCCTTTCCGATGATTTCAGTTTGTCTCAAGTTGGCATAAAACCATCCTTCATAGTAGTAAAATAAAATTTTTAGTAAGCAGGTAGGCGTGTGAATCTGGTTTCTGGGTTTGCAAGAATGAAAGCAGTGCATTGGGAAGTTGATAAGATTTTCAAGCTCATAGAATGATCTCTATAAATATATGTGTGTTTTATTATTGCAGATAATTACAAATTTTATTTGAAAATAACATTTTTAACATTTCTGCATTTTTTTACTTACATGAAAATACATAGGGCATATTGTTTCTTTCAGCAGCTTAGAAGCATATAGTTATTTTAAAGTTTTTTTTTAAATAAGATAAAACATCTCAGCAAAGTTTGTTGTTTCAGCCAAGTCAAAGATAGGGCTAGATATAGATAAGTATTAGAGTCCTTATCTACTAAAAACAAGGCCTGGATCCTATTATCAGCACTGAAATTTTGTTCTTTTTTTTTAAAGAACTTGTCAATTTTTTAAATCATTAGTATATATAGTTAGGTGTTTTGCCTGCATATATGTCTGTGTACTGTGTCCAAAGTGACCAGAAGTGTATGGCCAGATCATCATATTTTCTTTCACATGTAAATACATATATGTGTGTATGTTATATGTTATATAATATCTTGTATATTATATATAGTATATGCAACATATATTTTGTCTCTGTGAATGTGTATGTGTATACCAAATATACATACATACAGGAGAGAGAGAGTTAGAGTTGGAAAGTAGATTATAAAACTAGAAACTGGCCAGGCAGTGAAGGCTCACGACTTTAATCCCAGAACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACTAGCCTGGTCTACCGAGTGAGTTCCAAGACAGCCAGGGCTACAAAGAAAAACACTTTCTCAAGAAACCAAAAACTAGAAACTGAGCTACAGAAGACAAAACAATGTCTTAAATGGGAAATTAGAGAAAGAATTTTAGAGAGGATGATATGATAGGTGATTTTAAAGAAGAAAGATAGCTAGAAAGAAAGGAGCAGAGCAGTGGGAGGACAGGAAAATGAAGGTATGAAGGGGTTGGAGAAATAGCTTAATGTTTAGAAGCACTTGTTCTTACAGAGTACATAAGTTCAATTCACATGATAACTCACAACCACCCATAACTTCTGCTCAGGGGTTTCAGTATCGTCTTCTGATTTCTGTAGGTGTAAATATATGCATGCAAACAAAATATTCGTACCCATAAAATAAGCTTTTAAAAATTTTTTGAAGGAGGTGGAGTATATAAACCACGGAAAATATGGACTAAGCATTTAAAACTTTTCTCTTACCATACTTGCACTTAAGTGATATTTACTGTGCTGAACTTAACACATTTTCTCTTGACACTGCATGGTACTTTTCTAATAATGATACTTTGATTTTTTTTTTTTTAAAAGATGTCATTTGTTTGTTTATAGTCAGTTTTAGTCCAGGCTGGTCGCAAACTCATTTTGTAGCAATGGCTCCTGATTATTACTCCTTTTGCCTCCACTGGCCTGTGTTGGCATTGCAGTTATAGAATCACTAGCAAAATTAATGCACTGCTAAGGATGAAGCCCAAGGCGTTGTTCATGTTAGGCAAGCACTCTTCTGAGACACATTTCTCAACTAAAATTTTCATAGAAATACATGTAATTAAATTGTATTCAAAAATAAATATTAGGTAGAGCTAAGAAAATATTATATTAAAGAGATGTTTGCTGGCTTTACCATGTTGGTACTTTTATTTATAGATGAGTAAATGAAAAAAATATGCTTTTTCATTACTCTTCATATTTTTTGGAACTAGATGAGTTTAGATTGTTCTAAATCATTTTTCTCTTAATATTTTATTACTTCTATACTTAACATAGTCTAATGATGCAGTTCTTACCTACTAAGGTAATTAAATTACAGTAGAGTCCTGAAAAATGGAAAAGGTGTTTTGCATCTAGTATTTGCCAGAAATCATCCAATTTTATTTGTCACTATTGAGACTATATTTCTAAGAAGAAACTTCTTTTTAAAATTTGTTTACTTATGTAGTTTCCTTTATGTATTTCAGTATTTTGCCAGCTTCTATTTCAGAGACAGAGACAGAGACAGACAGACAAAGAGAAAGACAGAGAGAGACAAAGAGAGACAGAGACAGAGAGACAGAGTATACGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATACCACAGTGTGCATTGCCCATGAAGCTAGAAGAAGGCATCCCCTGGAATGAAGATAGTGGTGGTTGTGAGTTGCCTATGTGGGTATTTGGGAGCCTTGGTCTTGTACAAGAACAGCAAGTGTTCTTAACTAGATCTCTTGCCTCAGGTAAAAAAGGATTTTTTTTTTCTTTTGGAAACTTACATAATAGTGTGTGTATAGTGTGTATTTGAGAAGAGGGAAAAGATTACAGAAGAGAAGTCAACTTTTAGAAGTCACTCCTGTTACTGGTTCTGAGAATCAAACTCCAAGGCTTCAGACTCCAGAGCAAATCTTAAATCAAGTATTGAGCAATCCAGCCAGCCCCTCCTCATCTCTGTTTCAAAAAAAGAAAAACAAAGCCCTATTTTGTTTTATATCTAATGTAAAGGTTTATAATACATTTCCTATTTAG
Seq C2 exon
TGGATGAACCTAGCAAAGCAGATCTTGAAGGTTCCTCTGAAGTTACCATGAATGCAGAGTCAGGAACTGATTCTTCTAAATTGGATGAAGCATCTCCAGAAGTTATCAAGGTGTGCATTCTTAAAGCTGACTCAGAAGTGGATGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053211-Zfy1:NM_009570:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.608
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(42.9=74.6)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: