MmuINT0180549 @ mm10
Intron Retention
Gene
ENSMUSG00000042408 | Zmym6
Description
zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]
Coordinates
chr4:127120428-127124370:+
Coord C1 exon
chr4:127120428-127120572
Coord A exon
chr4:127120573-127122348
Coord C2 exon
chr4:127122349-127124370
Length
1776 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GATTCACATATTTCCTTTAGATT
3' ss Score
7.04
Exon sequences
Seq C1 exon
GGAAGTGCACAGGCACCTGCTGAGAGACTTCAGCCTCTGCAGCCCCCCAAGCTTCTGAAGAACAAAGGCATATTGTGCAAGCCAGTCACCCAGACCAAGGCCACCTCTTGCAGGCCACATACCCACCATGCTGCATGCCAGACAG
Seq A exon
GTAAGGAAGTGTCCTGGCACCTTGTATAAGCTTTGTTTTCTGCTTTGTTTTATTATGAAAAGGTAAAGGCAGTAATTTTCAGTGTAAAGTATTAATTCCTGGATTATATACTTCAAATCCATATGCATACAAAGTATTATATGTAGAGGTGAACATTTTATATGTGTACACATTACTTTTTCAAATGTATAAATAAGCCATTATAATTACTGATATATATCATATTTGCTTAAAAGCATTACCAGTTGAGCCTTAGTTCATCCAAATTTTTTTTCTTCTTTTCTTCCTTCCTTTCTTTTAAACTCTGCACTTAATTATTTAATTATAGGTTATTGAAATAATAGATAATAGGTCTGGGGTGTTGGTGATAGAAAGTTGAACTCCTACATGGAAAAGCTATAAAGTGTTGCCCCAATCAATGGTAATGCCTTAATCTCATATTCCTTGCATTTTTCAGTTATTTTAGTAGCCGGCTCTGCCCAAGGTGTGTGTGTGTATGTGATGCCGATGTGTCAATTTAGAGCTTTGCATTTTGCCACAGAGCTACAGTCCCAGTTTCTTTTGTTGTTAAGCATAACTTTATTCCATAGACTAACATATAAGTAAAAAACCTAGTCTGTGCCTGGGTGTTATGGTGAGCTACTATAGTCCCAGCTATTTGGGAGAATGAGGCAGAAAAGTCTTGAGTTTAAAGCCATTTTGGGCTGAATAGCAAGAGCCTGTCTCTAAATAAACAAACAGATAAAGCTTACTCTGGTAAAAGTAATATTGACATTTTAATAGGGTTCCTTTCCTTTGGTAGGAGTCAGAGATTTCTTTTTGTTTTGTTTTGTTTTGTTTGTTTGGTTTTTTGTTTTTCGAGACAGGGTTTCTCTGCGTAGCTCTGGCTGTCCTGGAGCTCACTCTGTAGCCCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATCAAAGGTGTGGGCCACCACCACTGCCCGGCCAGAGAATTCTTTCTTCAGGAAACTTGATTGTTTTATATTTCTGTGGAAAATGATACTCTTATCTGCTACATGAACTTCTGAAACCTTTCTTTTCATGTAAACAGTAGTAAAGGGTCTGTGGACATCTGGGATGTTTATGTTTCATTTTCATTTTGTTTTGTATTATTGGGTCTTTGGGTCTTTTTGTTTTTTGAGTTAAGATTTCTCTGTGTAGCCCTGGCTATCGAGGAACTTATTCTGTAGACCAGGCTGGCCTCTAACTCATTAGATATCCACCTGCCTCTGCCTCCTGAGTGCTGGGCTTAGATTCTAGTGTACACAACACAGCCAAACTCCAGGACTGGCCTTAGAGTTTACATGTGGTTGATTTGTCTGTCTTGGTGCTGAGCATTGGCTGCAGGGTGTCACACATCCCAAGTAAAGTGCCCTACCACTGAGCTGTACTCTAGCTCCTAAGTGTTCTTTTCAACGGCTAGATTTGATTTTTTTGGGGGGTGGGGAGGGGGTTTCGAGACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGATCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGCGCCACCACTGCCCACCTAGATTTTAAATTTTCTAGGCAGCATTGGTTCAAGCTGTGTTAATAGATCTTTATCCAGTTTTTCATAACACATTTGTTCATATCATATTATACATGTTCATATTGTAACAGTGATTCACATATTTCCTTTAG
Seq C2 exon
ATTTACCTCTGCCAGAATGGAAGAGTGAAGAACCTGAGTCTCCACCGGCAAAAAGAAGAAGAGTAGACTTTTCCCAGACTTACAATGCAGAGTATATCAGATTCGGTTTCATTATCTGTTCTGGATCAGAGGAAAGTTCACCAAGCCCACAGTGTGTCATTTGTGGAGAGGTCTTACCTAGTGAAAGTGTGATGCCAGTAAGTCTTTCTAACCATTTGAAGGCAAAACATTCAGACTTAGAGAACAAGCCTGTAGACTTTTTTGAGGAAAAGTCACTTGAAATGGAATGTCAAAATAGTTCTTTAAAAAAGTGTTTACTAGTTGAAGAGTCACTTGTGAAAGCTTCTTATTTAATCGCTTTCCAAATTGCCGCCAGGAATAAGCCATTCTCGATTGCTGAAGAATTAATTAAACCATATTTAGTAGAAATGTGTTCAGAAGTTTTAGGTTCAAGTGCTGGAGAAAAAATGAAAACCATCCCTCTTTCTAATAGCACAATTGGGTGCAGGATCAAGAAACTGTCTGATGACATCGAAGATCAGCTGCTGCAGAAGGTCAGGGAGTCCAGGTGGTTTGCCCTTCAGGTGGACGAGTCGTCTGAGGCCACAGAGGTGCCGCTTCTCCTCTGCTATGTCCGCTTCATCGACTATGACCGTGGAGATGTGAAAGAAGAATTACTTTTTTGCACTGAAATGCCTTCTCCGAGCACAGATCTTGAAGTGTTTGAATTAATAAATAAATATATTGATAGCAGATCTCTGAATTGGAACCATTGTGTTGGTTTCTGTACTGATGGGGCCGCAAGCATGACTGACAGGTATTTTCGTTTAAGGTCAAAAATTCAAGAAATTGCCAAGAATACAGTGACATTTACACATTGTTTCATTCACCGTGAACACTTAGCAGCCAAAAAGCTATCTCCATGCTTACATGAAATTCTTTTGCAGTCATCACAAATTTTAAGCTTTGTAAAGAACAGTGCTTCAGATTCACAAATGTTGACAATTTTGTGTGAAGAGATGGGATCTGAGCATGTGAATTTACCACTTAATGCTGAAGTACGCTGGCTGTCGAGAGGGAGAATTTTAACAAGATTATTTGAACTGAGACATGAAATTGAAATATTTTTAAATCAAAAGCATTCAGATTTGGCCAGGTATTTCCATGATGAGGAATGGATTGCAAAGCTAGCCTATCTAGCAGATATATTTTCACTTATAAATAAATTAAATTCAAGTCTCCAAGGAACCATGACTACTTTTTTCAATTTGTATAATAAAGTTGACGTATTTCAGAAAAGGCTAAAAATGTGGTTGAAGCGTGCACAGGAGAATGATTACGGCATGTTCCCTCTGTTTTCTGAGTTCTTGGACTCATCAGATGTAAGTGTGAAAAACATTGCTAGCATCATTTTTGAGCACCTGGAAGGACTTTCTCAGATATTCCATGCCTGTTACCCACCAGAAGAGGACTTGCGTTCCGGAAACCTGTGGCTCACAGATCCTTTTGCCACTTACCACAGTAACAATCTCACTGACTCCGAGGAAGAGAAACTCGCCGTGTTATCTGCCGATACGGGATTTCAGTCAGTTCACAAGTCAATGTCTGTCACACAGTTTTGGGTCAATGCAAAGACAAGTTATCCCAAGCTCCATGAAAAGGCATTGAAGCTGCTGCTGCCCTTCTCAAGCACCTGTCTGTGCGATGCCACCTTTTCAGCCTTGACTGCATCCAAACAGAGAGACCTTCGGACTTGCGGTCCCACCCTAAGACTGGCAGTCACATCATTAGTTCCAAGGATAGAAAAGTTAGCAAAGGAGAAAGAGTAGTATCCGTATTGCTTATCATCAGAGTGTATAATTTTGTGTTAAATTTTGTATAAGTATCCTAAAATACAATTTGCTAATGTATCTGTATTTTCAGTGATTAAATGTTTTAATATTTTTCCTTTGTTGTACAGGGATTTAAGAATTGTGGAACTGAGCATAATTATATGTAATTTTAATAACACAAGGGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042408:ENSMUST00000046751:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.469 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTGCTGAGAGACTTCAG
R:
AGAAAGACTTACTGGCATCACACT
Band lengths:
342-2118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types