RnoINT0169195 @ rn6
Intron Retention
Gene
ENSRNOG00000013865 | Zmym6
Description
zinc finger MYM-type containing 6 [Source:RGD Symbol;Acc:1561833]
Coordinates
chr5:145182608-145186285:+
Coord C1 exon
chr5:145182608-145182752
Coord A exon
chr5:145182753-145184339
Coord C2 exon
chr5:145184340-145186285
Length
1587 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GACTCAAATATTTCCTTTAGACT
3' ss Score
5.52
Exon sequences
Seq C1 exon
GGAAGCAAACCGGCAGCTGCTGAGAGACTTCAGTCTCCGCAGGCCCCCAAGCTTCTGAAGAACAAAGGCATACTGTGTAAGCCAGTTACACAGACCAAGGCCACCTCATGCAGACCACACACCCACCATGTTGCATGCCAGACAG
Seq A exon
GTCAGTGTCTTGGCGCCTTGTATAAGGTTTGTTTTCTGCTTTGTTTCTTTATAAAAAGGTAAGGCAGTAATTTTGAGTGTCAAATATTAATTTCTGGATTATATACTTCAAATCCATATGCATACAGAGTATTGTATGTAGAGGTAAACATTTTATACATGTGTGCATTGCTCTTTCAAATGCTCTTTCAAATAAGATACTACAATTATTGACTTACATACTTGCTTAAAAGCATTACCAGTTGAGCCTTACTTTGTCCAGTCTTTCTTTTTCTTCTTCCTTCCTTTCTTTTAAACTCTGCATTTAATTATTTAATTATAGGTTGCTAAAATAATAGATAATAGTCTGGGGTGATGGTGATAGAAAATCGTGTGAATTCCTCCATGGAGAAGCTATAAAATGTTGTCCCAGTCAATTCAATGGTCATGCCTTAATCTCACATTTGTCCTGTTTTTCAGTTATTTTAGTAGCCAGCTCTGCCCAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTAAGTGTGTGTGTGTAAGTGTGTGTGTGTGTGTGTGTGTTCTATCACCATCGTGTCAATTTAGAGCTTTGCATTTCACCACAGAGCTATAGTCCGAGTTTCTTTTGTTGTTAATCCTACTTTTATTCCATAGTCCAACATACATGTAAAAAGCCTAGTCTGGGCCTGGGTGTTGTGGTGAGCTAGTATAGTCCCAGCTATTTGGGAAAATGAGGCAGAAAAATCTTGAGTTCAACGCCATTTCGGGCTGAACAGCAAGAGCCTGTCTCTAAATAAACGAATAGATAAAGTTTACTCTGGTAAAAAGTAATCATTGACATTTTAATAGGGTTCCTTTCCTTTGGTAGACTTCAAAGAGAATTCCTTCTTCAGGAAATTTTGTTGTTTTACGTTTCTGTGAAAAGTGATACTCTTACCTGCTCCATGGACTTCTGTAACCGCTCTTTACATGGAAACGGTAGGAAAGGGACTTCTGTAACCGCTCTTTACGTGGAAACGGTAGGAAAGGGACTTCTGTAACCGCTCTTTACGTGGAAACGGTAGGAAAGGGACTTCTGTAACTGCTCTTTACGTGGAAACGGTAGGAAAGGGCTACAGACAACTGGATGTTTGTGCTTAAGTTTCATTTTGTTTGTAGTATTAGGCTTCTTGTTTGTTTTTTGAGTCAGGATTTCTCTGTGTAACCCTGGCTATCCAGAAACTTACTCTATAGACCAGGCTGGACTCTAGCTCACTGGAGATCCACCTGCCTCGGCCTCCCGAGTGCTGGGATTAGATTCTAGTGTACACAACACAGCCAAACTCCAGGACTGGCCTTAGAATTTACATGTGGTTGGTGTGTTTGTCTTGGCGCTGAGGATTGGCTCAGGATGTCACACATCCCAGGTAAAGTGCTCTGCCACTGAGCTGTTCTCTAGTCCCTAAATGTTTGTTTCAACTTCTAGATTTTAAGTTTTATGGGCAGCCTTGGGTCGAGCTGTGCTGATATCTTTGTGCAAGTTTTCATAACACATCTGTTCATCATATTATACATGTTCATATTGTAACAGTGACTCAAATATTTCCTTTAG
Seq C2 exon
ACTCACCTCTGCCAGATGGGAAAAATGAAGAATATGATTCTCCACCTGCAAAGAGAAGAAGAGTAGACTTTTTCCACACTTGCAATGCAGACTATATCAAATTTGGTTTCATTATCTGTTCTGGATCAAAGGAAAGTTCACCAAGCCCACAGTGTGTCATTTGTGGAGAGATCTTACCTAGTGAAAGTGTGATGCCAGTAAGTCTTTCTAACCATTTGAAGGCAAAACATTCAGATTTAGAGAACAAGCCAATAGACTTTTTTGAGGAAAAATCACTTGAAATGGAATGTCAAAACAGTTCTTTAAAAAAGTGTTTACTAGTTGAAGAGTCACTTGTGAAAGCTTCTTATTTAATTGCTTTCCAAATTGCTGCCAGGAATAAGCCATTCTCAATTGCTGAAGAATTAATTAAACCATATTTAGTAGAAATGTGTTCAGAAGTTTTGGGTTCAAGTGCTGGAGACAAAATGAAAACCATCCCTCTTTCTAATAGCACAATTGGGTGCAGGATCAAGAAACTGTCTGAAGACATTGAAGACCAGCTGCTGCAGAAGGTCCGGGAGTCCAGGTGGTTTGCCCTGCAGGTGGATGAGTCATCCGAGGTCACAGATGTGCCGCTTCTCCTCTGCTATGTCCGCTTCGTCGACTATGACTGTGGAGATGTGAAAGAAGAATTATTATTTTGCACTGAAATGCCTTCTCCGAGCACAGATCTTAAAGTGTTTGAATTAATAAATCAATATATTGATAGTAGGTCTCTGCATTGGAACCATTGTGTTGGTTTCTGTACTGACGGGGCTGCAAGCCTGACTGACGAGTGTTCTCACTTAAGGTCAAAAATTCAAGAAATTGCCAAGAATACGGTGACATTTACACATTGTTTCATTCACCGTGAACACTTAGCAGCCGAAAAACTATCTCCATGCTTACATGAGATTCTTTTGCAGTTGTCACAGATTTTAAGCTTTGTAAAGAACAGTGCCTCGGATTCACGAATGTTGACAATTTTGTGTGAAGAGGTGGGATCTGGGCATGTGAGTTTACCACTTAGTGCTGAAGTGCGCTGGCTGGCGAGAGGAAGAATTTTAACAAGACTGTTTGAACTGAGACATGAAATTGAAATATTTTTAAACCAAAAGCATTCAGATTTGGCCAGGTATTTCCATGATGAAGAATGGGTTGCAAAGCTAGCCTACTTAGCAGATATATTTTCGCTTATAAATAAATTAAATTCAAGTCTCCAAGGAACTATGACCACTTTTTTCAGTTTGTATAATAAAGTTGAAATATTTAAGAAAAGGCTAAAAATGTGGTTGAAGCGTGCACAAGAGAATGATTATGATATGTTCCCTCTATTTTCTGAGTTCTTGGACTCATCAGATGTAAGCGTGAGAAACATTGCTAGCATTATTTGTGAGCACCTGGAAGGACTTTCTCAGGTATTCCATGATTGTTATCCACCAGAAAAGGACTTGCGTTCAGGAAATCTGTGGCTCCTGAATCCTTTCGCCAGTTACCAGGATAACAATCTGACTGACTCGGAGGAAGAAAACCTTGCAGCGTTATCTTCAGATACGAGATTCCAATCAGTTCATAAATCAATGTCTGTCACGCAGTTTTGGGTCAATGCAAAAACAAGTTATCCCGAGCTCCATGAAAAGGCAATGAAATTGCTCCTGCCCTTCTCAAGCACCTGTCTGTGCGATGCTGCCTTCTCGGCCTTGACTGCCTCAAAACAGAGAGACCTGCGGACTTACAGTCCCTCCCTAAGATTGGCAGTCACGTCATTAGTTCCAAGGATAGACAAGTTAGCAAAGGAGAAAGACTAGTATCTGTATTGCTTATCGTCAGAGTGTATAATTTTGTGTTAAATTTTGTATAAGTATCCTAAAATACAATTTGCTAATGTATCTGTATTTTCAGTGATTAAATGTTTTAATATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013865:ENSRNOT00000019135:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=NA C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF142911=DUF4371=WD(100=23.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCTGAGAGACTTCAG
R:
AGAAAGACTTACTGGCATCACACT
Band lengths:
342-1929
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]