RnoEX0004961 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98364235-98370188:-
Coord C1 exon
chr10:98370023-98370188
Coord A exon
chr10:98367115-98367173
Coord C2 exon
chr10:98364235-98364325
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGCTCTCTTTCTCAGAAT
3' ss Score
10.85
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGAATATGGACGTCGACACCCACCTTTGTTTTTCTTGAAGTCCTCATTTTGGACAGGACAAAATCCAGCAGATCGGACTGTCCTTGACAATGAAAGGGACTATGAGTTTCCTGATGACTCTTTTGAACCTGTGTCTACAGACTTCCATGGGAAGGAAGTCATCAG
Seq A exon
AATCAGAAATCTTACAAAAGAATACATACAGAGGTCTAAGCGCACAGAAGCTTTGAAAG
Seq C2 exon
ATAGGAAAGTGTTCATCTCCCAGGGGAAGCTGAGGTGTGCAGGATCTTCCTTGTTTCTGAAGAAAAAATGGGGGATTGGTTATCACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-10/37=9-15
Average complexity
C3
Mappability confidence:
89%=91=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(1.4=9.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGATCGGACTGTCCTTGA
R:
GATCCTGCACACCTCAGCTTC
Band lengths:
145-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]