RnoEX0021201 @ rn6
Exon Skipping
Gene
ENSRNOG00000011202 | Chrna4
Description
cholinergic receptor nicotinic alpha 4 subunit [Source:RGD Symbol;Acc:2346]
Coordinates
chr3:176542897-176547965:-
Coord C1 exon
chr3:176547895-176547965
Coord A exon
chr3:176546327-176546478
Coord C2 exon
chr3:176542897-176542941
Length
152 bp
Sequences
Splice sites
3' ss Seq
ACCTTCCGCCTCCCCCACAGCTA
3' ss Score
9.68
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGGCCCCGGGGCGCCGCCGCCGCTGCTGCTACTGCCGCTGCTGCTGCTCCTAGGGACCGGCCTCTTGCCTG
Seq A exon
CTAGCAGCCACATAGAGACCCGGGCCCATGCGGAGGAGCGGCTCCTGAAGAGACTCTTCTCCGGCTACAACAAGTGGTCTCGGCCAGTAGCCAATATCTCAGATGTGGTCCTCGTCCGCTTTGGCTTGTCCATTGCTCAGCTCATTGACGTG
Seq C2 exon
GACGAGAAGAACCAGATGATGACAACCAACGTGTGGGTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011202-'1-5,'1-1,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=75.0)
C2:
PF0293118=Neur_chan_LBD=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTACTGCCGCTGCTG
R:
CTGCTTCACCCACACGTTGG
Band lengths:
91-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]