GgaEX0008163 @ galGal4
Exon Skipping
Gene
ENSGALG00000005801 | CHRNA4
Description
Neuronal acetylcholine receptor subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:P09482]
Coordinates
chr20:9232273-9237447:-
Coord C1 exon
chr20:9237378-9237447
Coord A exon
chr20:9236046-9236197
Coord C2 exon
chr20:9232273-9232317
Length
152 bp
Sequences
Splice sites
3' ss Seq
TCACCCTGCCCTGCCCACAGCTT
3' ss Score
9.78
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
TGCTCCACAATGGGATTTCTCGTGTCTAAGGGAAACCTCCTCCTCCTGCTGTGTGCCAGCATCTTCCCCG
Seq A exon
CTTTCGGCCACGTGGAAACGCGAGCCCATGCGGAGGAGCGCCTCCTGAAGAAACTCTTCTCCGGGTATAACAAGTGGTCCCGTCCCGTCGCCAACATTTCGGATGTGGTCCTGGTCCGCTTCGGCTTGTCCATAGCCCAGCTCATCGATGTT
Seq C2 exon
GATGAGAAGAACCAAATGATGACCACAAATGTGTGGGTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005801_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=76.5)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCACAATGGGATTTCTCGT
R:
CTGCTTCACCCACACATTTGT
Band lengths:
114-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]